Experiment: soil sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03660 and ABZR87_RS03665 are separated by 279 nucleotides ABZR87_RS03665 and ABZR87_RS03670 are separated by 141 nucleotides ABZR87_RS03670 and ABZR87_RS03675 are separated by 76 nucleotides
ABZR87_RS03660: ABZR87_RS03660 - PhzF family phenazine biosynthesis protein, at 764,205 to 765,119
_RS03660
ABZR87_RS03665: ABZR87_RS03665 - MarR family transcriptional regulator, at 765,399 to 765,860
_RS03665
ABZR87_RS03670: ABZR87_RS03670 - organic hydroperoxide resistance protein, at 766,002 to 766,427
_RS03670
ABZR87_RS03675: ABZR87_RS03675 - alpha/beta hydrolase, at 766,504 to 767,523
_RS03675
Position (kb) 765
766 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 764.444 kb on + strand, within ABZR87_RS03660 at 764.444 kb on + strand, within ABZR87_RS03660 at 764.444 kb on + strand, within ABZR87_RS03660 at 764.445 kb on - strand, within ABZR87_RS03660 at 764.445 kb on - strand, within ABZR87_RS03660 at 764.506 kb on + strand, within ABZR87_RS03660 at 764.512 kb on + strand, within ABZR87_RS03660 at 764.512 kb on + strand, within ABZR87_RS03660 at 764.512 kb on + strand, within ABZR87_RS03660 at 764.551 kb on + strand, within ABZR87_RS03660 at 764.551 kb on + strand, within ABZR87_RS03660 at 764.568 kb on + strand, within ABZR87_RS03660 at 764.619 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.925 kb on - strand, within ABZR87_RS03660 at 764.928 kb on + strand, within ABZR87_RS03660 at 764.929 kb on - strand, within ABZR87_RS03660 at 764.929 kb on - strand, within ABZR87_RS03660 at 764.929 kb on - strand, within ABZR87_RS03660 at 764.990 kb on - strand, within ABZR87_RS03660 at 765.106 kb on + strand at 765.106 kb on + strand at 765.107 kb on - strand at 765.107 kb on - strand at 765.107 kb on - strand at 765.131 kb on + strand at 765.131 kb on + strand at 765.132 kb on - strand at 765.132 kb on - strand at 765.132 kb on - strand at 765.132 kb on - strand at 765.181 kb on + strand at 765.181 kb on + strand at 765.181 kb on + strand at 765.181 kb on + strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.196 kb on + strand at 765.196 kb on + strand at 765.196 kb on + strand at 765.196 kb on + strand at 765.250 kb on + strand at 765.251 kb on - strand at 765.292 kb on + strand at 765.293 kb on + strand at 765.293 kb on + strand at 765.293 kb on + strand at 765.293 kb on + strand at 765.294 kb on - strand at 765.294 kb on - strand at 765.294 kb on - strand at 765.298 kb on + strand at 765.298 kb on + strand at 765.298 kb on + strand at 765.298 kb on + strand at 765.298 kb on + strand at 765.299 kb on - strand at 765.299 kb on - strand at 765.299 kb on - strand at 765.299 kb on - strand at 765.384 kb on + strand at 765.386 kb on + strand at 765.386 kb on + strand at 765.386 kb on + strand at 765.386 kb on + strand at 765.468 kb on + strand, within ABZR87_RS03665 at 765.468 kb on + strand, within ABZR87_RS03665 at 765.469 kb on - strand, within ABZR87_RS03665 at 765.498 kb on + strand, within ABZR87_RS03665 at 765.531 kb on + strand, within ABZR87_RS03665 at 765.531 kb on + strand, within ABZR87_RS03665 at 765.532 kb on - strand, within ABZR87_RS03665 at 765.540 kb on + strand, within ABZR87_RS03665 at 765.540 kb on + strand, within ABZR87_RS03665 at 765.540 kb on + strand, within ABZR87_RS03665 at 765.540 kb on + strand, within ABZR87_RS03665 at 765.541 kb on - strand, within ABZR87_RS03665 at 765.541 kb on - strand, within ABZR87_RS03665 at 765.870 kb on + strand at 765.870 kb on + strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.906 kb on - strand at 766.023 kb on + strand at 766.023 kb on + strand at 766.024 kb on - strand at 766.170 kb on + strand, within ABZR87_RS03670 at 766.171 kb on - strand, within ABZR87_RS03670 at 766.377 kb on + strand, within ABZR87_RS03670 at 766.378 kb on - strand, within ABZR87_RS03670 at 766.408 kb on + strand at 766.408 kb on + strand at 766.409 kb on - strand at 766.409 kb on - strand at 766.409 kb on - strand at 766.432 kb on + strand at 766.433 kb on - strand at 766.491 kb on + strand at 766.815 kb on + strand, within ABZR87_RS03675 at 766.815 kb on + strand, within ABZR87_RS03675 at 766.816 kb on - strand, within ABZR87_RS03675 at 766.816 kb on - strand, within ABZR87_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB remove 764,444 + ABZR87_RS03660 0.26 -0.1 764,444 + ABZR87_RS03660 0.26 -1.0 764,444 + ABZR87_RS03660 0.26 -1.0 764,445 - ABZR87_RS03660 0.26 +0.1 764,445 - ABZR87_RS03660 0.26 +0.3 764,506 + ABZR87_RS03660 0.33 +0.4 764,512 + ABZR87_RS03660 0.34 +1.3 764,512 + ABZR87_RS03660 0.34 -1.1 764,512 + ABZR87_RS03660 0.34 -0.6 764,551 + ABZR87_RS03660 0.38 +0.0 764,551 + ABZR87_RS03660 0.38 -0.3 764,568 + ABZR87_RS03660 0.40 +0.6 764,619 + ABZR87_RS03660 0.45 -0.2 764,924 + ABZR87_RS03660 0.79 +0.6 764,924 + ABZR87_RS03660 0.79 -0.9 764,924 + ABZR87_RS03660 0.79 -0.7 764,924 + ABZR87_RS03660 0.79 +0.0 764,924 + ABZR87_RS03660 0.79 -0.8 764,924 + ABZR87_RS03660 0.79 +0.2 764,925 - ABZR87_RS03660 0.79 +0.4 764,928 + ABZR87_RS03660 0.79 -0.4 764,929 - ABZR87_RS03660 0.79 -1.6 764,929 - ABZR87_RS03660 0.79 +0.8 764,929 - ABZR87_RS03660 0.79 +0.4 764,990 - ABZR87_RS03660 0.86 +0.1 765,106 + -1.2 765,106 + -1.7 765,107 - +0.3 765,107 - -0.3 765,107 - -1.1 765,131 + +1.3 765,131 + -0.1 765,132 - -0.7 765,132 - -0.5 765,132 - -2.4 765,132 - -1.9 765,181 + -0.8 765,181 + +0.6 765,181 + +0.1 765,181 + +1.0 765,182 - -4.1 765,182 - +0.2 765,182 - -0.6 765,182 - +0.9 765,182 - +0.0 765,182 - +0.2 765,182 - -1.4 765,196 + +1.0 765,196 + -0.7 765,196 + -0.4 765,196 + -0.4 765,250 + +0.8 765,251 - +1.7 765,292 + -0.4 765,293 + +0.6 765,293 + +0.1 765,293 + +0.9 765,293 + -2.1 765,294 - +1.5 765,294 - -0.5 765,294 - -0.2 765,298 + +0.1 765,298 + -1.8 765,298 + +0.3 765,298 + -1.1 765,298 + +0.4 765,299 - +0.3 765,299 - -0.1 765,299 - -0.4 765,299 - +1.9 765,384 + +1.1 765,386 + -0.1 765,386 + -0.7 765,386 + -0.2 765,386 + -0.8 765,468 + ABZR87_RS03665 0.15 -0.8 765,468 + ABZR87_RS03665 0.15 -0.6 765,469 - ABZR87_RS03665 0.15 -0.6 765,498 + ABZR87_RS03665 0.21 -0.8 765,531 + ABZR87_RS03665 0.29 -3.0 765,531 + ABZR87_RS03665 0.29 -1.8 765,532 - ABZR87_RS03665 0.29 -0.1 765,540 + ABZR87_RS03665 0.31 +0.1 765,540 + ABZR87_RS03665 0.31 -2.0 765,540 + ABZR87_RS03665 0.31 -1.2 765,540 + ABZR87_RS03665 0.31 -2.0 765,541 - ABZR87_RS03665 0.31 -0.3 765,541 - ABZR87_RS03665 0.31 -0.1 765,870 + +1.0 765,870 + -0.4 765,871 - +0.4 765,871 - -1.9 765,906 - -1.0 766,023 + +0.2 766,023 + -0.0 766,024 - +0.2 766,170 + ABZR87_RS03670 0.39 +0.5 766,171 - ABZR87_RS03670 0.40 +0.1 766,377 + ABZR87_RS03670 0.88 -0.9 766,378 - ABZR87_RS03670 0.88 +0.7 766,408 + -0.6 766,408 + +0.0 766,409 - +0.6 766,409 - +0.2 766,409 - -0.5 766,432 + +0.1 766,433 - +0.2 766,491 + -0.0 766,815 + ABZR87_RS03675 0.30 +0.5 766,815 + ABZR87_RS03675 0.30 -0.7 766,816 - ABZR87_RS03675 0.31 +0.1 766,816 - ABZR87_RS03675 0.31 -0.5
Or see this region's nucleotide sequence