Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03595

Experiment: soil sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03590 and ABZR87_RS03595 are separated by 160 nucleotidesABZR87_RS03595 and ABZR87_RS03600 are separated by 107 nucleotides ABZR87_RS03590: ABZR87_RS03590 - SDR family oxidoreductase, at 754,625 to 755,374 _RS03590 ABZR87_RS03595: ABZR87_RS03595 - hypothetical protein, at 755,535 to 755,786 _RS03595 ABZR87_RS03600: ABZR87_RS03600 - chaperonin GroEL, at 755,894 to 757,516 _RS03600 Position (kb) 755 756Strain fitness (log2 ratio) -2 -1 0 1 2at 754.838 kb on + strand, within ABZR87_RS03590at 754.838 kb on + strand, within ABZR87_RS03590at 754.839 kb on - strand, within ABZR87_RS03590at 754.839 kb on - strand, within ABZR87_RS03590at 754.839 kb on - strand, within ABZR87_RS03590at 755.075 kb on + strand, within ABZR87_RS03590at 755.076 kb on - strand, within ABZR87_RS03590at 755.221 kb on - strand, within ABZR87_RS03590at 755.326 kb on + strandat 755.326 kb on + strandat 755.326 kb on + strandat 755.326 kb on + strandat 755.536 kb on + strandat 755.536 kb on + strandat 755.536 kb on + strandat 755.536 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.779 kb on - strandat 755.779 kb on - strandat 755.779 kb on - strandat 755.779 kb on - strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.899 kb on - strandat 755.899 kb on - strandat 755.899 kb on - strandat 755.899 kb on - strandat 756.014 kb on - strandat 756.084 kb on + strand, within ABZR87_RS03600at 756.084 kb on + strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.438 kb on + strand, within ABZR87_RS03600at 756.438 kb on + strand, within ABZR87_RS03600at 756.439 kb on - strand, within ABZR87_RS03600

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
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754,838 + ABZR87_RS03590 0.28 +0.7
754,838 + ABZR87_RS03590 0.28 -0.9
754,839 - ABZR87_RS03590 0.29 +2.4
754,839 - ABZR87_RS03590 0.29 -0.3
754,839 - ABZR87_RS03590 0.29 -0.7
755,075 + ABZR87_RS03590 0.60 -1.0
755,076 - ABZR87_RS03590 0.60 +0.9
755,221 - ABZR87_RS03590 0.79 -1.2
755,326 + +0.2
755,326 + +0.0
755,326 + -1.8
755,326 + -1.7
755,536 + -0.3
755,536 + -0.4
755,536 + +0.9
755,536 + -1.8
755,778 + +0.3
755,778 + +0.4
755,778 + -0.9
755,778 + -1.2
755,778 + +0.0
755,779 - -0.7
755,779 - -0.4
755,779 - +0.2
755,779 - -0.3
755,898 + +0.4
755,898 + -0.1
755,898 + -1.0
755,898 + +0.0
755,898 + -0.8
755,899 - -1.4
755,899 - +0.2
755,899 - -1.1
755,899 - -0.9
756,014 - +0.1
756,084 + ABZR87_RS03600 0.12 -0.3
756,084 + ABZR87_RS03600 0.12 -0.4
756,085 - ABZR87_RS03600 0.12 +0.9
756,085 - ABZR87_RS03600 0.12 -1.7
756,085 - ABZR87_RS03600 0.12 -0.7
756,085 - ABZR87_RS03600 0.12 +0.0
756,090 + ABZR87_RS03600 0.12 +1.1
756,090 + ABZR87_RS03600 0.12 -0.4
756,090 + ABZR87_RS03600 0.12 +0.6
756,090 + ABZR87_RS03600 0.12 +0.7
756,090 + ABZR87_RS03600 0.12 +0.1
756,090 + ABZR87_RS03600 0.12 -0.1
756,090 + ABZR87_RS03600 0.12 -0.6
756,090 + ABZR87_RS03600 0.12 +0.7
756,090 + ABZR87_RS03600 0.12 -0.4
756,090 + ABZR87_RS03600 0.12 -0.6
756,090 + ABZR87_RS03600 0.12 -0.1
756,090 + ABZR87_RS03600 0.12 +1.0
756,090 + ABZR87_RS03600 0.12 +0.1
756,090 + ABZR87_RS03600 0.12 +0.3
756,091 - ABZR87_RS03600 0.12 +0.9
756,091 - ABZR87_RS03600 0.12 -1.2
756,091 - ABZR87_RS03600 0.12 -1.0
756,091 - ABZR87_RS03600 0.12 +1.8
756,091 - ABZR87_RS03600 0.12 -0.8
756,091 - ABZR87_RS03600 0.12 +0.8
756,091 - ABZR87_RS03600 0.12 -0.8
756,091 - ABZR87_RS03600 0.12 +0.0
756,091 - ABZR87_RS03600 0.12 -0.8
756,091 - ABZR87_RS03600 0.12 -1.8
756,438 + ABZR87_RS03600 0.34 +0.1
756,438 + ABZR87_RS03600 0.34 -0.4
756,439 - ABZR87_RS03600 0.34 -0.5

Or see this region's nucleotide sequence