Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01265

Experiment: soil sample 9; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01260 and ABZR87_RS01265 are separated by 157 nucleotidesABZR87_RS01265 and ABZR87_RS01270 are separated by 17 nucleotides ABZR87_RS01260: ABZR87_RS01260 - metallophosphoesterase, at 261,114 to 262,280 _RS01260 ABZR87_RS01265: ABZR87_RS01265 - sensor domain-containing diguanylate cyclase, at 262,438 to 263,457 _RS01265 ABZR87_RS01270: ABZR87_RS01270 - ATP-dependent DNA helicase RecG, at 263,475 to 265,622 _RS01270 Position (kb) 262 263 264Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 261.453 kb on + strand, within ABZR87_RS01260at 261.454 kb on - strand, within ABZR87_RS01260at 261.513 kb on + strand, within ABZR87_RS01260at 261.514 kb on - strand, within ABZR87_RS01260at 261.514 kb on - strand, within ABZR87_RS01260at 261.514 kb on - strand, within ABZR87_RS01260at 261.515 kb on + strand, within ABZR87_RS01260at 261.515 kb on + strand, within ABZR87_RS01260at 261.515 kb on + strand, within ABZR87_RS01260at 261.515 kb on + strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.518 kb on - strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.810 kb on + strand, within ABZR87_RS01260at 261.810 kb on + strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.813 kb on + strand, within ABZR87_RS01260at 261.813 kb on + strand, within ABZR87_RS01260at 262.185 kb on + strandat 262.185 kb on + strandat 262.185 kb on + strandat 262.186 kb on - strandat 262.186 kb on - strandat 262.186 kb on - strandat 262.186 kb on - strandat 262.206 kb on + strandat 262.207 kb on - strandat 262.226 kb on - strandat 262.252 kb on + strandat 262.252 kb on + strandat 262.252 kb on + strandat 262.253 kb on - strandat 262.261 kb on + strandat 262.262 kb on - strandat 262.333 kb on - strandat 262.333 kb on - strandat 262.333 kb on - strandat 262.376 kb on - strandat 262.376 kb on - strandat 262.376 kb on - strandat 262.376 kb on - strandat 262.624 kb on + strand, within ABZR87_RS01265at 262.624 kb on + strand, within ABZR87_RS01265at 262.624 kb on + strand, within ABZR87_RS01265at 262.625 kb on - strand, within ABZR87_RS01265at 262.625 kb on - strand, within ABZR87_RS01265at 262.625 kb on - strand, within ABZR87_RS01265at 262.960 kb on + strand, within ABZR87_RS01265at 262.960 kb on + strand, within ABZR87_RS01265at 262.960 kb on + strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.301 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.302 kb on + strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.303 kb on - strand, within ABZR87_RS01265at 263.324 kb on + strand, within ABZR87_RS01265at 263.324 kb on + strand, within ABZR87_RS01265at 263.325 kb on - strand, within ABZR87_RS01265at 263.413 kb on + strandat 263.413 kb on + strandat 263.413 kb on + strandat 263.413 kb on + strandat 263.413 kb on + strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.414 kb on - strandat 263.441 kb on + strandat 263.441 kb on + strandat 263.441 kb on + strandat 263.442 kb on - strandat 263.442 kb on - strandat 263.476 kb on + strandat 263.488 kb on + strandat 263.489 kb on - strandat 263.489 kb on - strandat 263.764 kb on + strand, within ABZR87_RS01270at 263.764 kb on + strand, within ABZR87_RS01270at 263.764 kb on + strand, within ABZR87_RS01270at 263.764 kb on + strand, within ABZR87_RS01270at 263.765 kb on - strand, within ABZR87_RS01270at 263.765 kb on - strand, within ABZR87_RS01270at 263.765 kb on - strand, within ABZR87_RS01270at 263.909 kb on + strand, within ABZR87_RS01270at 263.910 kb on - strand, within ABZR87_RS01270at 263.997 kb on + strand, within ABZR87_RS01270at 263.998 kb on - strand, within ABZR87_RS01270at 263.998 kb on - strand, within ABZR87_RS01270at 264.098 kb on - strand, within ABZR87_RS01270at 264.127 kb on + strand, within ABZR87_RS01270at 264.127 kb on + strand, within ABZR87_RS01270at 264.127 kb on + strand, within ABZR87_RS01270at 264.127 kb on + strand, within ABZR87_RS01270at 264.128 kb on - strand, within ABZR87_RS01270at 264.235 kb on + strand, within ABZR87_RS01270at 264.235 kb on + strand, within ABZR87_RS01270at 264.235 kb on + strand, within ABZR87_RS01270at 264.236 kb on - strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.238 kb on + strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270at 264.239 kb on - strand, within ABZR87_RS01270

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
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261,453 + ABZR87_RS01260 0.29 -0.8
261,454 - ABZR87_RS01260 0.29 -0.4
261,513 + ABZR87_RS01260 0.34 -1.0
261,514 - ABZR87_RS01260 0.34 +0.8
261,514 - ABZR87_RS01260 0.34 +0.1
261,514 - ABZR87_RS01260 0.34 -1.7
261,515 + ABZR87_RS01260 0.34 -0.5
261,515 + ABZR87_RS01260 0.34 -0.1
261,515 + ABZR87_RS01260 0.34 -2.8
261,515 + ABZR87_RS01260 0.34 -0.2
261,516 - ABZR87_RS01260 0.34 -0.4
261,516 - ABZR87_RS01260 0.34 -0.6
261,516 - ABZR87_RS01260 0.34 -0.9
261,516 - ABZR87_RS01260 0.34 -1.9
261,516 - ABZR87_RS01260 0.34 +0.6
261,518 - ABZR87_RS01260 0.35 -0.2
261,645 + ABZR87_RS01260 0.46 -0.7
261,645 + ABZR87_RS01260 0.46 +0.9
261,645 + ABZR87_RS01260 0.46 -0.5
261,645 + ABZR87_RS01260 0.46 -0.4
261,645 + ABZR87_RS01260 0.46 -0.0
261,645 + ABZR87_RS01260 0.46 -0.2
261,645 + ABZR87_RS01260 0.46 -1.9
261,646 - ABZR87_RS01260 0.46 +0.4
261,646 - ABZR87_RS01260 0.46 +1.1
261,646 - ABZR87_RS01260 0.46 +0.9
261,646 - ABZR87_RS01260 0.46 -0.4
261,646 - ABZR87_RS01260 0.46 -0.4
261,646 - ABZR87_RS01260 0.46 -0.6
261,646 - ABZR87_RS01260 0.46 -0.1
261,810 + ABZR87_RS01260 0.60 -2.1
261,810 + ABZR87_RS01260 0.60 -0.7
261,811 - ABZR87_RS01260 0.60 +0.1
261,811 - ABZR87_RS01260 0.60 -0.0
261,811 - ABZR87_RS01260 0.60 -0.6
261,811 - ABZR87_RS01260 0.60 -2.5
261,811 - ABZR87_RS01260 0.60 -0.1
261,813 + ABZR87_RS01260 0.60 +0.1
261,813 + ABZR87_RS01260 0.60 -0.9
262,185 + -1.0
262,185 + -0.2
262,185 + -0.9
262,186 - -1.0
262,186 - -0.7
262,186 - -0.3
262,186 - -0.9
262,206 + -0.3
262,207 - +0.7
262,226 - +0.1
262,252 + -0.9
262,252 + +1.7
262,252 + -1.5
262,253 - -0.2
262,261 + +0.5
262,262 - -0.8
262,333 - -1.2
262,333 - -1.0
262,333 - -0.9
262,376 - +0.1
262,376 - +0.1
262,376 - +0.2
262,376 - +0.2
262,624 + ABZR87_RS01265 0.18 +0.5
262,624 + ABZR87_RS01265 0.18 +0.0
262,624 + ABZR87_RS01265 0.18 +0.1
262,625 - ABZR87_RS01265 0.18 +0.3
262,625 - ABZR87_RS01265 0.18 +0.1
262,625 - ABZR87_RS01265 0.18 +0.2
262,960 + ABZR87_RS01265 0.51 -0.1
262,960 + ABZR87_RS01265 0.51 -0.2
262,960 + ABZR87_RS01265 0.51 -1.1
262,961 - ABZR87_RS01265 0.51 +0.5
262,961 - ABZR87_RS01265 0.51 +0.6
262,961 - ABZR87_RS01265 0.51 -0.3
262,961 - ABZR87_RS01265 0.51 +0.4
263,014 + ABZR87_RS01265 0.56 -0.4
263,014 + ABZR87_RS01265 0.56 +0.3
263,014 + ABZR87_RS01265 0.56 -1.0
263,014 + ABZR87_RS01265 0.56 +0.7
263,014 + ABZR87_RS01265 0.56 -0.3
263,015 - ABZR87_RS01265 0.57 -1.0
263,015 - ABZR87_RS01265 0.57 +0.5
263,015 - ABZR87_RS01265 0.57 +1.5
263,015 - ABZR87_RS01265 0.57 -0.6
263,301 + ABZR87_RS01265 0.85 +0.9
263,302 + ABZR87_RS01265 0.85 -0.1
263,302 + ABZR87_RS01265 0.85 +0.0
263,302 + ABZR87_RS01265 0.85 +1.8
263,302 + ABZR87_RS01265 0.85 +0.5
263,302 + ABZR87_RS01265 0.85 +0.6
263,302 + ABZR87_RS01265 0.85 +0.2
263,302 + ABZR87_RS01265 0.85 +0.9
263,302 + ABZR87_RS01265 0.85 +0.3
263,303 - ABZR87_RS01265 0.85 -1.2
263,303 - ABZR87_RS01265 0.85 -0.3
263,303 - ABZR87_RS01265 0.85 -1.4
263,303 - ABZR87_RS01265 0.85 -0.5
263,303 - ABZR87_RS01265 0.85 +0.6
263,303 - ABZR87_RS01265 0.85 +0.2
263,303 - ABZR87_RS01265 0.85 -0.9
263,303 - ABZR87_RS01265 0.85 -0.3
263,303 - ABZR87_RS01265 0.85 -0.6
263,303 - ABZR87_RS01265 0.85 -0.3
263,324 + ABZR87_RS01265 0.87 +0.2
263,324 + ABZR87_RS01265 0.87 -0.2
263,325 - ABZR87_RS01265 0.87 +0.9
263,413 + -0.2
263,413 + -1.5
263,413 + +0.4
263,413 + -0.2
263,413 + +0.1
263,414 - -1.0
263,414 - -0.1
263,414 - +1.2
263,414 - -0.4
263,414 - -0.1
263,414 - +0.1
263,414 - +0.4
263,414 - -0.5
263,414 - -0.7
263,414 - +1.5
263,441 + +0.2
263,441 + -0.4
263,441 + +0.0
263,442 - +0.5
263,442 - +0.3
263,476 + +0.9
263,488 + -0.4
263,489 - +0.9
263,489 - +1.1
263,764 + ABZR87_RS01270 0.13 +0.5
263,764 + ABZR87_RS01270 0.13 -1.2
263,764 + ABZR87_RS01270 0.13 +0.3
263,764 + ABZR87_RS01270 0.13 -0.5
263,765 - ABZR87_RS01270 0.14 +0.5
263,765 - ABZR87_RS01270 0.14 -0.6
263,765 - ABZR87_RS01270 0.14 -0.7
263,909 + ABZR87_RS01270 0.20 +0.9
263,910 - ABZR87_RS01270 0.20 -0.1
263,997 + ABZR87_RS01270 0.24 -0.9
263,998 - ABZR87_RS01270 0.24 -1.0
263,998 - ABZR87_RS01270 0.24 -1.1
264,098 - ABZR87_RS01270 0.29 -1.9
264,127 + ABZR87_RS01270 0.30 -1.8
264,127 + ABZR87_RS01270 0.30 -0.4
264,127 + ABZR87_RS01270 0.30 -1.1
264,127 + ABZR87_RS01270 0.30 -0.6
264,128 - ABZR87_RS01270 0.30 -1.3
264,235 + ABZR87_RS01270 0.35 -1.8
264,235 + ABZR87_RS01270 0.35 -2.5
264,235 + ABZR87_RS01270 0.35 -0.4
264,236 - ABZR87_RS01270 0.35 +0.1
264,238 + ABZR87_RS01270 0.36 -0.7
264,238 + ABZR87_RS01270 0.36 +0.2
264,238 + ABZR87_RS01270 0.36 -0.4
264,238 + ABZR87_RS01270 0.36 -1.9
264,238 + ABZR87_RS01270 0.36 -0.4
264,238 + ABZR87_RS01270 0.36 -0.3
264,238 + ABZR87_RS01270 0.36 -1.0
264,238 + ABZR87_RS01270 0.36 -0.2
264,239 - ABZR87_RS01270 0.36 -2.7
264,239 - ABZR87_RS01270 0.36 +0.3
264,239 - ABZR87_RS01270 0.36 -0.2
264,239 - ABZR87_RS01270 0.36 -2.5
264,239 - ABZR87_RS01270 0.36 -0.4

Or see this region's nucleotide sequence