Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01260

Experiment: soil sample 9; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS01255 and ABZR87_RS01260 are separated by 152 nucleotidesABZR87_RS01260 and ABZR87_RS01265 are separated by 157 nucleotides ABZR87_RS01255: ABZR87_RS01255 - LysR substrate-binding domain-containing protein, at 260,014 to 260,961 _RS01255 ABZR87_RS01260: ABZR87_RS01260 - metallophosphoesterase, at 261,114 to 262,280 _RS01260 ABZR87_RS01265: ABZR87_RS01265 - sensor domain-containing diguanylate cyclase, at 262,438 to 263,457 _RS01265 Position (kb) 261 262 263Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.171 kb on + strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.172 kb on - strand, within ABZR87_RS01255at 260.217 kb on + strand, within ABZR87_RS01255at 260.217 kb on + strand, within ABZR87_RS01255at 260.217 kb on + strand, within ABZR87_RS01255at 260.217 kb on + strand, within ABZR87_RS01255at 260.218 kb on - strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.256 kb on + strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.257 kb on - strand, within ABZR87_RS01255at 260.384 kb on - strand, within ABZR87_RS01255at 260.384 kb on - strand, within ABZR87_RS01255at 260.480 kb on + strand, within ABZR87_RS01255at 260.651 kb on + strand, within ABZR87_RS01255at 260.652 kb on - strand, within ABZR87_RS01255at 260.652 kb on - strand, within ABZR87_RS01255at 260.652 kb on - strand, within ABZR87_RS01255at 260.666 kb on + strand, within ABZR87_RS01255at 260.666 kb on + strand, within ABZR87_RS01255at 260.667 kb on - strand, within ABZR87_RS01255at 260.667 kb on - strand, within ABZR87_RS01255at 260.939 kb on + strandat 260.939 kb on + strandat 260.939 kb on + strandat 260.939 kb on + strandat 260.939 kb on + strandat 260.939 kb on + strandat 260.939 kb on + strandat 260.939 kb on + strandat 260.939 kb on + strandat 260.939 kb on + strandat 260.939 kb on + strandat 260.940 kb on - strandat 260.940 kb on - strandat 260.940 kb on - strandat 260.940 kb on - strandat 260.940 kb on - strandat 260.940 kb on - strandat 260.940 kb on - strandat 260.940 kb on - strandat 260.940 kb on - strandat 260.989 kb on + strandat 260.990 kb on - strandat 261.131 kb on + strandat 261.131 kb on + strandat 261.132 kb on - strandat 261.210 kb on + strandat 261.210 kb on + strandat 261.210 kb on + strandat 261.210 kb on + strandat 261.210 kb on + strandat 261.210 kb on + strandat 261.210 kb on + strandat 261.211 kb on - strandat 261.211 kb on - strandat 261.211 kb on - strandat 261.211 kb on - strandat 261.211 kb on - strandat 261.211 kb on - strandat 261.213 kb on - strandat 261.213 kb on - strandat 261.286 kb on + strand, within ABZR87_RS01260at 261.453 kb on + strand, within ABZR87_RS01260at 261.454 kb on - strand, within ABZR87_RS01260at 261.513 kb on + strand, within ABZR87_RS01260at 261.514 kb on - strand, within ABZR87_RS01260at 261.514 kb on - strand, within ABZR87_RS01260at 261.514 kb on - strand, within ABZR87_RS01260at 261.515 kb on + strand, within ABZR87_RS01260at 261.515 kb on + strand, within ABZR87_RS01260at 261.515 kb on + strand, within ABZR87_RS01260at 261.515 kb on + strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.516 kb on - strand, within ABZR87_RS01260at 261.518 kb on - strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.645 kb on + strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.646 kb on - strand, within ABZR87_RS01260at 261.810 kb on + strand, within ABZR87_RS01260at 261.810 kb on + strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.811 kb on - strand, within ABZR87_RS01260at 261.813 kb on + strand, within ABZR87_RS01260at 261.813 kb on + strand, within ABZR87_RS01260at 262.185 kb on + strandat 262.185 kb on + strandat 262.185 kb on + strandat 262.186 kb on - strandat 262.186 kb on - strandat 262.186 kb on - strandat 262.186 kb on - strandat 262.206 kb on + strandat 262.207 kb on - strandat 262.226 kb on - strandat 262.252 kb on + strandat 262.252 kb on + strandat 262.252 kb on + strandat 262.253 kb on - strandat 262.261 kb on + strandat 262.262 kb on - strandat 262.333 kb on - strandat 262.333 kb on - strandat 262.333 kb on - strandat 262.376 kb on - strandat 262.376 kb on - strandat 262.376 kb on - strandat 262.376 kb on - strandat 262.624 kb on + strand, within ABZR87_RS01265at 262.624 kb on + strand, within ABZR87_RS01265at 262.624 kb on + strand, within ABZR87_RS01265at 262.625 kb on - strand, within ABZR87_RS01265at 262.625 kb on - strand, within ABZR87_RS01265at 262.625 kb on - strand, within ABZR87_RS01265at 262.960 kb on + strand, within ABZR87_RS01265at 262.960 kb on + strand, within ABZR87_RS01265at 262.960 kb on + strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 262.961 kb on - strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.014 kb on + strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265at 263.015 kb on - strand, within ABZR87_RS01265

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB
remove
260,171 + ABZR87_RS01255 0.17 -3.9
260,171 + ABZR87_RS01255 0.17 -3.1
260,171 + ABZR87_RS01255 0.17 -4.2
260,171 + ABZR87_RS01255 0.17 -4.9
260,171 + ABZR87_RS01255 0.17 -3.0
260,171 + ABZR87_RS01255 0.17 -4.3
260,172 - ABZR87_RS01255 0.17 -3.9
260,172 - ABZR87_RS01255 0.17 -3.6
260,172 - ABZR87_RS01255 0.17 -3.2
260,172 - ABZR87_RS01255 0.17 -2.7
260,172 - ABZR87_RS01255 0.17 -1.5
260,172 - ABZR87_RS01255 0.17 -5.2
260,217 + ABZR87_RS01255 0.21 -3.7
260,217 + ABZR87_RS01255 0.21 -4.3
260,217 + ABZR87_RS01255 0.21 -3.7
260,217 + ABZR87_RS01255 0.21 -3.8
260,218 - ABZR87_RS01255 0.22 -4.2
260,256 + ABZR87_RS01255 0.26 -2.6
260,256 + ABZR87_RS01255 0.26 -2.5
260,256 + ABZR87_RS01255 0.26 -4.3
260,256 + ABZR87_RS01255 0.26 -3.0
260,256 + ABZR87_RS01255 0.26 -3.6
260,256 + ABZR87_RS01255 0.26 -3.0
260,256 + ABZR87_RS01255 0.26 -2.8
260,256 + ABZR87_RS01255 0.26 -3.6
260,256 + ABZR87_RS01255 0.26 -1.3
260,256 + ABZR87_RS01255 0.26 -4.7
260,256 + ABZR87_RS01255 0.26 -5.0
260,256 + ABZR87_RS01255 0.26 -4.5
260,256 + ABZR87_RS01255 0.26 -5.1
260,256 + ABZR87_RS01255 0.26 -3.4
260,257 - ABZR87_RS01255 0.26 -4.7
260,257 - ABZR87_RS01255 0.26 -3.7
260,257 - ABZR87_RS01255 0.26 -3.5
260,257 - ABZR87_RS01255 0.26 -4.3
260,257 - ABZR87_RS01255 0.26 -3.3
260,257 - ABZR87_RS01255 0.26 -3.5
260,257 - ABZR87_RS01255 0.26 -3.5
260,257 - ABZR87_RS01255 0.26 -3.4
260,257 - ABZR87_RS01255 0.26 -5.0
260,257 - ABZR87_RS01255 0.26 -5.0
260,257 - ABZR87_RS01255 0.26 -3.5
260,257 - ABZR87_RS01255 0.26 -2.3
260,257 - ABZR87_RS01255 0.26 -3.2
260,257 - ABZR87_RS01255 0.26 -1.1
260,257 - ABZR87_RS01255 0.26 -4.1
260,384 - ABZR87_RS01255 0.39 -1.9
260,384 - ABZR87_RS01255 0.39 -4.4
260,480 + ABZR87_RS01255 0.49 +1.1
260,651 + ABZR87_RS01255 0.67 -2.7
260,652 - ABZR87_RS01255 0.67 -1.1
260,652 - ABZR87_RS01255 0.67 -3.5
260,652 - ABZR87_RS01255 0.67 -0.9
260,666 + ABZR87_RS01255 0.69 +0.3
260,666 + ABZR87_RS01255 0.69 -0.4
260,667 - ABZR87_RS01255 0.69 -2.0
260,667 - ABZR87_RS01255 0.69 -1.2
260,939 + -2.2
260,939 + -0.3
260,939 + -3.5
260,939 + -4.9
260,939 + -1.1
260,939 + -4.8
260,939 + -2.6
260,939 + -3.0
260,939 + -2.5
260,939 + -1.4
260,939 + -3.8
260,940 - -5.2
260,940 - -4.3
260,940 - -5.2
260,940 - -3.8
260,940 - -6.7
260,940 - -3.8
260,940 - -6.9
260,940 - -0.2
260,940 - -3.4
260,989 + -1.0
260,990 - -0.2
261,131 + +0.6
261,131 + +0.5
261,132 - -0.5
261,210 + -1.2
261,210 + -3.1
261,210 + +0.1
261,210 + -0.7
261,210 + +0.6
261,210 + -0.5
261,210 + -0.6
261,211 - -0.3
261,211 - -0.6
261,211 - -0.2
261,211 - -0.5
261,211 - +0.6
261,211 - -0.7
261,213 - -0.4
261,213 - +0.7
261,286 + ABZR87_RS01260 0.15 -0.4
261,453 + ABZR87_RS01260 0.29 -0.8
261,454 - ABZR87_RS01260 0.29 -0.4
261,513 + ABZR87_RS01260 0.34 -1.0
261,514 - ABZR87_RS01260 0.34 +0.8
261,514 - ABZR87_RS01260 0.34 +0.1
261,514 - ABZR87_RS01260 0.34 -1.7
261,515 + ABZR87_RS01260 0.34 -0.5
261,515 + ABZR87_RS01260 0.34 -0.1
261,515 + ABZR87_RS01260 0.34 -2.8
261,515 + ABZR87_RS01260 0.34 -0.2
261,516 - ABZR87_RS01260 0.34 -0.4
261,516 - ABZR87_RS01260 0.34 -0.6
261,516 - ABZR87_RS01260 0.34 -0.9
261,516 - ABZR87_RS01260 0.34 -1.9
261,516 - ABZR87_RS01260 0.34 +0.6
261,518 - ABZR87_RS01260 0.35 -0.2
261,645 + ABZR87_RS01260 0.46 -0.7
261,645 + ABZR87_RS01260 0.46 +0.9
261,645 + ABZR87_RS01260 0.46 -0.5
261,645 + ABZR87_RS01260 0.46 -0.4
261,645 + ABZR87_RS01260 0.46 -0.0
261,645 + ABZR87_RS01260 0.46 -0.2
261,645 + ABZR87_RS01260 0.46 -1.9
261,646 - ABZR87_RS01260 0.46 +0.4
261,646 - ABZR87_RS01260 0.46 +1.1
261,646 - ABZR87_RS01260 0.46 +0.9
261,646 - ABZR87_RS01260 0.46 -0.4
261,646 - ABZR87_RS01260 0.46 -0.4
261,646 - ABZR87_RS01260 0.46 -0.6
261,646 - ABZR87_RS01260 0.46 -0.1
261,810 + ABZR87_RS01260 0.60 -2.1
261,810 + ABZR87_RS01260 0.60 -0.7
261,811 - ABZR87_RS01260 0.60 +0.1
261,811 - ABZR87_RS01260 0.60 -0.0
261,811 - ABZR87_RS01260 0.60 -0.6
261,811 - ABZR87_RS01260 0.60 -2.5
261,811 - ABZR87_RS01260 0.60 -0.1
261,813 + ABZR87_RS01260 0.60 +0.1
261,813 + ABZR87_RS01260 0.60 -0.9
262,185 + -1.0
262,185 + -0.2
262,185 + -0.9
262,186 - -1.0
262,186 - -0.7
262,186 - -0.3
262,186 - -0.9
262,206 + -0.3
262,207 - +0.7
262,226 - +0.1
262,252 + -0.9
262,252 + +1.7
262,252 + -1.5
262,253 - -0.2
262,261 + +0.5
262,262 - -0.8
262,333 - -1.2
262,333 - -1.0
262,333 - -0.9
262,376 - +0.1
262,376 - +0.1
262,376 - +0.2
262,376 - +0.2
262,624 + ABZR87_RS01265 0.18 +0.5
262,624 + ABZR87_RS01265 0.18 +0.0
262,624 + ABZR87_RS01265 0.18 +0.1
262,625 - ABZR87_RS01265 0.18 +0.3
262,625 - ABZR87_RS01265 0.18 +0.1
262,625 - ABZR87_RS01265 0.18 +0.2
262,960 + ABZR87_RS01265 0.51 -0.1
262,960 + ABZR87_RS01265 0.51 -0.2
262,960 + ABZR87_RS01265 0.51 -1.1
262,961 - ABZR87_RS01265 0.51 +0.5
262,961 - ABZR87_RS01265 0.51 +0.6
262,961 - ABZR87_RS01265 0.51 -0.3
262,961 - ABZR87_RS01265 0.51 +0.4
263,014 + ABZR87_RS01265 0.56 -0.4
263,014 + ABZR87_RS01265 0.56 +0.3
263,014 + ABZR87_RS01265 0.56 -1.0
263,014 + ABZR87_RS01265 0.56 +0.7
263,014 + ABZR87_RS01265 0.56 -0.3
263,015 - ABZR87_RS01265 0.57 -1.0
263,015 - ABZR87_RS01265 0.57 +0.5
263,015 - ABZR87_RS01265 0.57 +1.5
263,015 - ABZR87_RS01265 0.57 -0.6

Or see this region's nucleotide sequence