Experiment: soil sample 9; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00320 and ABZR87_RS00325 are separated by 1 nucleotides ABZR87_RS00325 and ABZR87_RS00330 are separated by 118 nucleotides ABZR87_RS00330 and ABZR87_RS00335 are separated by 180 nucleotides ABZR87_RS00335 and ABZR87_RS00340 are separated by 13 nucleotides ABZR87_RS00340 and ABZR87_RS00345 are separated by 177 nucleotides
ABZR87_RS00320: ABZR87_RS00320 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 65,679 to 66,662
_RS00320
ABZR87_RS00325: ABZR87_RS00325 - peptidylprolyl isomerase, at 66,664 to 67,152
_RS00325
ABZR87_RS00330: ABZR87_RS00330 - DNA repair protein RadC, at 67,271 to 67,945
_RS00330
ABZR87_RS00335: ABZR87_RS00335 - 50S ribosomal protein L28, at 68,126 to 68,359
_RS00335
ABZR87_RS00340: ABZR87_RS00340 - 50S ribosomal protein L33, at 68,373 to 68,543
_RS00340
ABZR87_RS00345: ABZR87_RS00345 - L-aspartate oxidase, at 68,721 to 70,322
_RS00345
Position (kb) 67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 66.774 kb on - strand, within ABZR87_RS00325 at 66.774 kb on - strand, within ABZR87_RS00325 at 66.774 kb on - strand, within ABZR87_RS00325 at 66.774 kb on - strand, within ABZR87_RS00325 at 66.778 kb on - strand, within ABZR87_RS00325 at 66.949 kb on - strand, within ABZR87_RS00325 at 67.065 kb on - strand, within ABZR87_RS00325 at 67.185 kb on - strand at 67.185 kb on - strand at 67.189 kb on + strand at 67.189 kb on + strand at 67.189 kb on + strand at 67.189 kb on + strand at 67.190 kb on - strand at 67.190 kb on - strand at 67.190 kb on - strand at 67.190 kb on - strand at 67.223 kb on + strand at 67.223 kb on + strand at 67.223 kb on + strand at 67.224 kb on - strand at 67.270 kb on + strand at 67.270 kb on + strand at 67.270 kb on + strand at 67.271 kb on - strand at 67.271 kb on - strand at 67.505 kb on + strand, within ABZR87_RS00330 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.505 kb on + strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.506 kb on - strand, within ABZR87_RS00330 at 67.659 kb on + strand, within ABZR87_RS00330 at 67.659 kb on + strand, within ABZR87_RS00330 at 67.659 kb on + strand, within ABZR87_RS00330 at 67.660 kb on - strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.665 kb on + strand, within ABZR87_RS00330 at 67.666 kb on - strand, within ABZR87_RS00330 at 67.666 kb on - strand, within ABZR87_RS00330 at 67.666 kb on - strand, within ABZR87_RS00330 at 67.916 kb on + strand at 67.916 kb on + strand at 67.917 kb on - strand at 67.917 kb on - strand at 68.357 kb on + strand at 68.358 kb on - strand at 68.362 kb on - strand at 68.362 kb on - strand at 68.368 kb on + strand at 68.368 kb on + strand at 68.368 kb on + strand at 68.369 kb on - strand at 68.423 kb on + strand, within ABZR87_RS00340 at 68.424 kb on - strand, within ABZR87_RS00340 at 68.521 kb on - strand, within ABZR87_RS00340 at 68.521 kb on - strand, within ABZR87_RS00340 at 68.541 kb on + strand at 68.541 kb on + strand at 68.542 kb on - strand at 68.542 kb on - strand at 68.542 kb on - strand at 68.542 kb on - strand at 68.542 kb on - strand at 68.646 kb on + strand at 68.683 kb on + strand at 68.683 kb on + strand at 68.683 kb on + strand at 68.684 kb on - strand at 68.783 kb on - strand at 68.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 9; outgrowth in LB remove 66,774 - ABZR87_RS00325 0.22 -0.8 66,774 - ABZR87_RS00325 0.22 -0.1 66,774 - ABZR87_RS00325 0.22 +2.3 66,774 - ABZR87_RS00325 0.22 +0.8 66,778 - ABZR87_RS00325 0.23 -0.5 66,949 - ABZR87_RS00325 0.58 +0.4 67,065 - ABZR87_RS00325 0.82 -1.9 67,185 - -0.5 67,185 - -3.4 67,189 + +0.8 67,189 + +0.0 67,189 + -0.3 67,189 + +0.9 67,190 - -0.4 67,190 - -0.0 67,190 - -0.1 67,190 - -1.3 67,223 + -0.5 67,223 + -0.9 67,223 + +0.1 67,224 - +0.1 67,270 + +0.3 67,270 + -0.0 67,270 + +0.6 67,271 - -3.4 67,271 - +0.2 67,505 + ABZR87_RS00330 0.35 -0.0 67,505 + ABZR87_RS00330 0.35 -0.6 67,505 + ABZR87_RS00330 0.35 -1.3 67,505 + ABZR87_RS00330 0.35 -0.4 67,506 - ABZR87_RS00330 0.35 -1.3 67,506 - ABZR87_RS00330 0.35 +0.2 67,506 - ABZR87_RS00330 0.35 -1.4 67,506 - ABZR87_RS00330 0.35 -1.0 67,659 + ABZR87_RS00330 0.57 -2.4 67,659 + ABZR87_RS00330 0.57 +0.1 67,659 + ABZR87_RS00330 0.57 -0.5 67,660 - ABZR87_RS00330 0.58 +0.8 67,665 + ABZR87_RS00330 0.58 -1.5 67,665 + ABZR87_RS00330 0.58 +0.4 67,665 + ABZR87_RS00330 0.58 +0.1 67,665 + ABZR87_RS00330 0.58 +0.4 67,665 + ABZR87_RS00330 0.58 -0.1 67,665 + ABZR87_RS00330 0.58 -0.9 67,665 + ABZR87_RS00330 0.58 +0.5 67,665 + ABZR87_RS00330 0.58 +1.1 67,665 + ABZR87_RS00330 0.58 -0.2 67,665 + ABZR87_RS00330 0.58 -2.2 67,666 - ABZR87_RS00330 0.59 +0.0 67,666 - ABZR87_RS00330 0.59 +0.1 67,666 - ABZR87_RS00330 0.59 -0.9 67,916 + +0.5 67,916 + -2.3 67,917 - -1.0 67,917 - -1.3 68,357 + -2.3 68,358 - +0.1 68,362 - -1.6 68,362 - -0.6 68,368 + +0.5 68,368 + -0.9 68,368 + -0.8 68,369 - -0.8 68,423 + ABZR87_RS00340 0.29 +0.5 68,424 - ABZR87_RS00340 0.30 -0.4 68,521 - ABZR87_RS00340 0.87 -0.8 68,521 - ABZR87_RS00340 0.87 -1.6 68,541 + -1.3 68,541 + -2.1 68,542 - +0.3 68,542 - -0.9 68,542 - -1.0 68,542 - -0.1 68,542 - -1.2 68,646 + -0.2 68,683 + +0.8 68,683 + -0.6 68,683 + +1.0 68,684 - +0.4 68,783 - -0.2 68,783 - -0.5
Or see this region's nucleotide sequence