Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0977

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0976 and prk are separated by 111 nucleotidesprk and petH are separated by 404 nucleotides Synpcc7942_0976: Synpcc7942_0976 - CBS, at 982,168 to 984,897 _0976 Synpcc7942_0977: prk - phosphoribulokinase, at 985,009 to 986,010 prk Synpcc7942_0978: petH - ferredoxin-NADP oxidoreductase, at 986,415 to 987,626 petH Position (kb) 985 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 984.891 kb on + strandat 984.891 kb on + strandat 984.891 kb on + strandat 984.891 kb on + strandat 984.899 kb on - strandat 984.899 kb on - strandat 984.899 kb on - strandat 984.899 kb on - strandat 984.928 kb on + strandat 984.928 kb on + strandat 984.928 kb on + strandat 984.928 kb on + strandat 984.936 kb on - strandat 984.960 kb on - strandat 984.962 kb on - strandat 984.967 kb on + strandat 984.974 kb on - strandat 984.975 kb on - strandat 984.990 kb on - strandat 984.997 kb on + strandat 985.007 kb on + strandat 985.007 kb on + strandat 985.051 kb on + strandat 986.219 kb on + strandat 986.258 kb on + strandat 986.265 kb on + strandat 986.265 kb on + strandat 986.270 kb on + strandat 986.270 kb on + strandat 986.270 kb on + strandat 986.270 kb on + strandat 986.273 kb on - strandat 986.273 kb on - strandat 986.273 kb on - strandat 986.273 kb on - strandat 986.278 kb on - strandat 986.278 kb on - strandat 986.280 kb on + strandat 986.280 kb on - strandat 986.287 kb on + strandat 986.287 kb on + strandat 986.287 kb on + strandat 986.289 kb on + strandat 986.295 kb on - strandat 986.295 kb on - strandat 986.295 kb on - strandat 986.295 kb on - strandat 986.295 kb on - strandat 986.295 kb on - strandat 986.295 kb on - strandat 986.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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984,891 + +2.1
984,891 + -0.5
984,891 + +1.0
984,891 + +2.3
984,899 - -1.7
984,899 - +0.5
984,899 - +0.8
984,899 - -2.7
984,928 + -0.1
984,928 + +1.5
984,928 + +0.3
984,928 + -1.1
984,936 - -0.5
984,960 - +0.9
984,962 - +0.8
984,967 + +1.5
984,974 - -1.1
984,975 - +0.6
984,990 - +1.8
984,997 + +1.7
985,007 + -0.7
985,007 + -1.3
985,051 + -0.7
986,219 + -1.3
986,258 + +1.7
986,265 + +0.6
986,265 + -1.3
986,270 + -0.9
986,270 + +1.6
986,270 + -0.3
986,270 + +0.0
986,273 - +1.2
986,273 - +1.9
986,273 - +0.7
986,273 - -0.8
986,278 - +0.8
986,278 - -3.3
986,280 + -1.1
986,280 - -2.7
986,287 + +0.4
986,287 + +0.3
986,287 + +1.5
986,289 + +0.3
986,295 - -1.2
986,295 - +1.5
986,295 - +0.3
986,295 - -0.5
986,295 - -1.4
986,295 - -1.7
986,295 - -0.1
986,295 - +0.5

Or see this region's nucleotide sequence