Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0298

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsH and Synpcc7942_0298 are separated by 266 nucleotidesSynpcc7942_0298 and mreC overlap by 4 nucleotidesmreC and mreB are separated by 24 nucleotides Synpcc7942_0297: ftsH - FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41, at 294,872 to 296,713 ftsH Synpcc7942_0298: Synpcc7942_0298 - hypothetical protein, at 296,980 to 297,627 _0298 Synpcc7942_0299: mreC - rod shape-determining protein MreC, at 297,624 to 298,373 mreC Synpcc7942_0300: mreB - rod shape-determining protein MreB, at 298,398 to 299,435 mreB Position (kb) 296 297 298Strain fitness (log2 ratio) -1 0 1 2at 296.794 kb on + strandat 296.802 kb on - strandat 296.850 kb on + strandat 296.899 kb on + strandat 296.920 kb on - strandat 296.922 kb on + strandat 296.922 kb on + strandat 296.939 kb on - strandat 296.942 kb on - strandat 296.986 kb on - strandat 296.988 kb on - strandat 296.988 kb on - strandat 297.580 kb on + strandat 297.598 kb on - strandat 297.641 kb on - strandat 298.372 kb on + strandat 298.380 kb on + strandat 298.383 kb on - strandat 298.385 kb on + strandat 298.393 kb on - strandat 298.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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296,794 + +0.0
296,802 - +0.5
296,850 + +1.3
296,899 + -0.9
296,920 - +0.8
296,922 + -1.6
296,922 + -1.4
296,939 - +0.9
296,942 - +0.7
296,986 - -1.1
296,988 - +2.6
296,988 - -1.3
297,580 + +0.3
297,598 - -0.6
297,641 - -0.3
298,372 + +1.9
298,380 + +1.0
298,383 - +0.1
298,385 + +1.3
298,393 - -0.5
298,393 - -0.5

Or see this region's nucleotide sequence