Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0129 and Synpcc7942_0130 overlap by 56 nucleotides Synpcc7942_0130 and Synpcc7942_0131 are separated by 260 nucleotides Synpcc7942_0131 and Synpcc7942_0132 are separated by 225 nucleotides
Synpcc7942_0129: Synpcc7942_0129 - Resolvase, RNase H-like fold, at 128,446 to 128,877
_0129
Synpcc7942_0130: Synpcc7942_0130 - hypothetical protein, at 128,822 to 129,409
_0130
Synpcc7942_0131: Synpcc7942_0131 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 129,670 to 132,495
_0131
Synpcc7942_0132: Synpcc7942_0132 - hypothetical protein, at 132,721 to 133,770
_0132
Position (kb) 129
130
131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 128.670 kb on + strand, within Synpcc7942_0129 at 128.711 kb on - strand, within Synpcc7942_0129 at 128.722 kb on - strand, within Synpcc7942_0129 at 128.750 kb on - strand, within Synpcc7942_0129 at 128.784 kb on - strand, within Synpcc7942_0129 at 128.843 kb on + strand at 128.907 kb on + strand, within Synpcc7942_0130 at 128.915 kb on - strand, within Synpcc7942_0130 at 128.920 kb on - strand, within Synpcc7942_0130 at 128.941 kb on - strand, within Synpcc7942_0130 at 128.977 kb on - strand, within Synpcc7942_0130 at 129.018 kb on - strand, within Synpcc7942_0130 at 129.031 kb on + strand, within Synpcc7942_0130 at 129.033 kb on + strand, within Synpcc7942_0130 at 129.051 kb on - strand, within Synpcc7942_0130 at 129.102 kb on + strand, within Synpcc7942_0130 at 129.122 kb on - strand, within Synpcc7942_0130 at 129.210 kb on - strand, within Synpcc7942_0130 at 129.224 kb on + strand, within Synpcc7942_0130 at 129.229 kb on + strand, within Synpcc7942_0130 at 129.231 kb on - strand, within Synpcc7942_0130 at 129.243 kb on + strand, within Synpcc7942_0130 at 129.251 kb on - strand, within Synpcc7942_0130 at 129.252 kb on + strand, within Synpcc7942_0130 at 129.323 kb on - strand, within Synpcc7942_0130 at 129.330 kb on - strand, within Synpcc7942_0130 at 129.332 kb on + strand, within Synpcc7942_0130 at 129.369 kb on - strand at 129.404 kb on + strand at 129.424 kb on - strand at 129.488 kb on - strand at 129.859 kb on - strand at 129.869 kb on - strand at 129.881 kb on - strand at 130.030 kb on + strand, within Synpcc7942_0131 at 130.070 kb on + strand, within Synpcc7942_0131 at 130.086 kb on - strand, within Synpcc7942_0131 at 130.124 kb on - strand, within Synpcc7942_0131 at 130.148 kb on + strand, within Synpcc7942_0131 at 130.148 kb on + strand, within Synpcc7942_0131 at 130.169 kb on + strand, within Synpcc7942_0131 at 130.177 kb on - strand, within Synpcc7942_0131 at 130.193 kb on + strand, within Synpcc7942_0131 at 130.193 kb on + strand, within Synpcc7942_0131 at 130.194 kb on + strand, within Synpcc7942_0131 at 130.201 kb on - strand, within Synpcc7942_0131 at 130.203 kb on - strand, within Synpcc7942_0131 at 130.233 kb on - strand, within Synpcc7942_0131 at 130.252 kb on + strand, within Synpcc7942_0131 at 130.257 kb on - strand, within Synpcc7942_0131 at 130.376 kb on - strand, within Synpcc7942_0131 at 130.376 kb on - strand, within Synpcc7942_0131 at 130.400 kb on + strand, within Synpcc7942_0131 at 130.407 kb on - strand, within Synpcc7942_0131 at 130.420 kb on + strand, within Synpcc7942_0131 at 130.493 kb on + strand, within Synpcc7942_0131 at 130.503 kb on + strand, within Synpcc7942_0131 at 130.503 kb on + strand, within Synpcc7942_0131 at 130.503 kb on + strand, within Synpcc7942_0131 at 130.503 kb on + strand, within Synpcc7942_0131 at 130.511 kb on - strand, within Synpcc7942_0131 at 130.511 kb on - strand, within Synpcc7942_0131 at 130.578 kb on - strand, within Synpcc7942_0131 at 130.580 kb on + strand, within Synpcc7942_0131 at 130.792 kb on + strand, within Synpcc7942_0131 at 130.821 kb on + strand, within Synpcc7942_0131 at 130.850 kb on + strand, within Synpcc7942_0131 at 131.038 kb on + strand, within Synpcc7942_0131 at 131.053 kb on - strand, within Synpcc7942_0131 at 131.086 kb on - strand, within Synpcc7942_0131 at 131.088 kb on + strand, within Synpcc7942_0131 at 131.090 kb on + strand, within Synpcc7942_0131 at 131.090 kb on + strand at 131.101 kb on + strand, within Synpcc7942_0131 at 131.101 kb on + strand, within Synpcc7942_0131 at 131.101 kb on + strand, within Synpcc7942_0131 at 131.101 kb on + strand, within Synpcc7942_0131 at 131.159 kb on + strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.167 kb on - strand, within Synpcc7942_0131 at 131.503 kb on + strand, within Synpcc7942_0131 at 131.833 kb on - strand, within Synpcc7942_0131 at 131.835 kb on + strand, within Synpcc7942_0131 at 131.840 kb on + strand, within Synpcc7942_0131 at 131.877 kb on - strand, within Synpcc7942_0131 at 131.878 kb on + strand, within Synpcc7942_0131 at 132.032 kb on + strand, within Synpcc7942_0131 at 132.109 kb on - strand, within Synpcc7942_0131 at 132.362 kb on + strand at 132.439 kb on - strand at 132.513 kb on + strand at 132.582 kb on - strand at 132.592 kb on + strand at 132.625 kb on - strand at 132.625 kb on - strand at 132.625 kb on - strand at 132.627 kb on + strand at 132.633 kb on + strand at 132.665 kb on + strand at 132.665 kb on + strand at 132.673 kb on - strand at 132.700 kb on - strand at 132.702 kb on + strand at 132.702 kb on + strand at 132.717 kb on + strand at 132.736 kb on - strand at 132.752 kb on - strand at 132.754 kb on - strand at 132.756 kb on + strand at 132.764 kb on - strand at 132.781 kb on + strand at 132.784 kb on + strand at 132.785 kb on + strand at 132.833 kb on - strand, within Synpcc7942_0132 at 132.835 kb on + strand, within Synpcc7942_0132 at 132.872 kb on - strand, within Synpcc7942_0132 at 132.888 kb on + strand, within Synpcc7942_0132 at 132.890 kb on + strand, within Synpcc7942_0132 at 132.903 kb on - strand, within Synpcc7942_0132 at 132.914 kb on - strand, within Synpcc7942_0132 at 132.915 kb on - strand, within Synpcc7942_0132 at 132.915 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.927 kb on + strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.949 kb on - strand at 132.956 kb on - strand, within Synpcc7942_0132 at 132.957 kb on - strand, within Synpcc7942_0132 at 132.972 kb on - strand, within Synpcc7942_0132 at 132.998 kb on + strand, within Synpcc7942_0132 at 133.006 kb on - strand, within Synpcc7942_0132 at 133.006 kb on - strand at 133.006 kb on - strand, within Synpcc7942_0132 at 133.008 kb on + strand, within Synpcc7942_0132 at 133.008 kb on + strand, within Synpcc7942_0132 at 133.016 kb on - strand, within Synpcc7942_0132 at 133.026 kb on - strand at 133.034 kb on + strand, within Synpcc7942_0132 at 133.041 kb on - strand, within Synpcc7942_0132 at 133.041 kb on - strand, within Synpcc7942_0132 at 133.048 kb on + strand, within Synpcc7942_0132 at 133.048 kb on + strand, within Synpcc7942_0132 at 133.101 kb on + strand, within Synpcc7942_0132 at 133.101 kb on + strand, within Synpcc7942_0132 at 133.109 kb on - strand, within Synpcc7942_0132 at 133.120 kb on - strand, within Synpcc7942_0132 at 133.120 kb on - strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.156 kb on - strand, within Synpcc7942_0132 at 133.166 kb on - strand, within Synpcc7942_0132 at 133.166 kb on - strand, within Synpcc7942_0132 at 133.190 kb on + strand at 133.198 kb on - strand, within Synpcc7942_0132 at 133.212 kb on + strand, within Synpcc7942_0132 at 133.212 kb on - strand, within Synpcc7942_0132 at 133.228 kb on + strand, within Synpcc7942_0132 at 133.236 kb on - strand, within Synpcc7942_0132 at 133.236 kb on - strand, within Synpcc7942_0132 at 133.248 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.258 kb on + strand, within Synpcc7942_0132 at 133.266 kb on + strand, within Synpcc7942_0132 at 133.267 kb on - strand, within Synpcc7942_0132 at 133.267 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.283 kb on + strand, within Synpcc7942_0132 at 133.283 kb on + strand, within Synpcc7942_0132 at 133.291 kb on - strand, within Synpcc7942_0132 at 133.293 kb on + strand, within Synpcc7942_0132 at 133.293 kb on + strand, within Synpcc7942_0132 at 133.307 kb on + strand, within Synpcc7942_0132 at 133.308 kb on - strand, within Synpcc7942_0132 at 133.317 kb on - strand, within Synpcc7942_0132 at 133.321 kb on + strand, within Synpcc7942_0132 at 133.321 kb on + strand, within Synpcc7942_0132 at 133.329 kb on - strand, within Synpcc7942_0132 at 133.329 kb on - strand, within Synpcc7942_0132 at 133.339 kb on - strand, within Synpcc7942_0132 at 133.375 kb on - strand, within Synpcc7942_0132 at 133.381 kb on - strand, within Synpcc7942_0132 at 133.386 kb on + strand, within Synpcc7942_0132 at 133.386 kb on + strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.401 kb on - strand, within Synpcc7942_0132 at 133.435 kb on + strand, within Synpcc7942_0132 at 133.461 kb on - strand, within Synpcc7942_0132 at 133.481 kb on - strand, within Synpcc7942_0132 at 133.487 kb on + strand, within Synpcc7942_0132
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 128,670 + Synpcc7942_0129 0.52 -3.3 128,711 - Synpcc7942_0129 0.61 -3.3 128,722 - Synpcc7942_0129 0.64 -2.3 128,750 - Synpcc7942_0129 0.70 -3.3 128,784 - Synpcc7942_0129 0.78 -1.7 128,843 + +0.6 128,907 + Synpcc7942_0130 0.14 +0.5 128,915 - Synpcc7942_0130 0.16 -0.3 128,920 - Synpcc7942_0130 0.17 +1.7 128,941 - Synpcc7942_0130 0.20 +0.9 128,977 - Synpcc7942_0130 0.26 +1.3 129,018 - Synpcc7942_0130 0.33 +0.7 129,031 + Synpcc7942_0130 0.36 +1.8 129,033 + Synpcc7942_0130 0.36 -1.1 129,051 - Synpcc7942_0130 0.39 +1.1 129,102 + Synpcc7942_0130 0.48 +0.5 129,122 - Synpcc7942_0130 0.51 -0.7 129,210 - Synpcc7942_0130 0.66 +0.3 129,224 + Synpcc7942_0130 0.68 +1.2 129,229 + Synpcc7942_0130 0.69 -3.0 129,231 - Synpcc7942_0130 0.70 +0.7 129,243 + Synpcc7942_0130 0.72 +2.0 129,251 - Synpcc7942_0130 0.73 +0.3 129,252 + Synpcc7942_0130 0.73 +0.1 129,323 - Synpcc7942_0130 0.85 +1.7 129,330 - Synpcc7942_0130 0.86 +2.0 129,332 + Synpcc7942_0130 0.87 +1.9 129,369 - -0.9 129,404 + -1.1 129,424 - +0.3 129,488 - -0.4 129,859 - +0.1 129,869 - +0.6 129,881 - +0.3 130,030 + Synpcc7942_0131 0.13 +2.4 130,070 + Synpcc7942_0131 0.14 +0.8 130,086 - Synpcc7942_0131 0.15 +1.8 130,124 - Synpcc7942_0131 0.16 +1.2 130,148 + Synpcc7942_0131 0.17 +1.1 130,148 + Synpcc7942_0131 0.17 +0.3 130,169 + Synpcc7942_0131 0.18 +0.7 130,177 - Synpcc7942_0131 0.18 -0.7 130,193 + Synpcc7942_0131 0.19 +1.9 130,193 + Synpcc7942_0131 0.19 +1.9 130,194 + Synpcc7942_0131 0.19 +0.7 130,201 - Synpcc7942_0131 0.19 -1.7 130,203 - Synpcc7942_0131 0.19 +1.2 130,233 - Synpcc7942_0131 0.20 +1.5 130,252 + Synpcc7942_0131 0.21 +2.3 130,257 - Synpcc7942_0131 0.21 +0.8 130,376 - Synpcc7942_0131 0.25 +0.6 130,376 - Synpcc7942_0131 0.25 +0.3 130,400 + Synpcc7942_0131 0.26 +1.1 130,407 - Synpcc7942_0131 0.26 +0.7 130,420 + Synpcc7942_0131 0.27 -1.2 130,493 + Synpcc7942_0131 0.29 +0.6 130,503 + Synpcc7942_0131 0.29 -0.7 130,503 + Synpcc7942_0131 0.29 +0.9 130,503 + Synpcc7942_0131 0.29 -1.5 130,503 + Synpcc7942_0131 0.29 +0.3 130,511 - Synpcc7942_0131 0.30 +0.2 130,511 - Synpcc7942_0131 0.30 +1.7 130,578 - Synpcc7942_0131 0.32 +2.2 130,580 + Synpcc7942_0131 0.32 +1.2 130,792 + Synpcc7942_0131 0.40 +0.6 130,821 + Synpcc7942_0131 0.41 -2.1 130,850 + Synpcc7942_0131 0.42 -1.2 131,038 + Synpcc7942_0131 0.48 +0.6 131,053 - Synpcc7942_0131 0.49 +1.7 131,086 - Synpcc7942_0131 0.50 +0.0 131,088 + Synpcc7942_0131 0.50 +0.1 131,090 + Synpcc7942_0131 0.50 +1.2 131,090 + -1.7 131,101 + Synpcc7942_0131 0.51 +0.2 131,101 + Synpcc7942_0131 0.51 -1.7 131,101 + Synpcc7942_0131 0.51 -2.7 131,101 + Synpcc7942_0131 0.51 +1.3 131,159 + Synpcc7942_0131 0.53 +0.7 131,167 - Synpcc7942_0131 0.53 +0.6 131,167 - Synpcc7942_0131 0.53 -0.1 131,167 - Synpcc7942_0131 0.53 +1.1 131,167 - Synpcc7942_0131 0.53 -0.3 131,167 - Synpcc7942_0131 0.53 +1.2 131,503 + Synpcc7942_0131 0.65 +0.1 131,833 - Synpcc7942_0131 0.77 +1.4 131,835 + Synpcc7942_0131 0.77 +2.4 131,840 + Synpcc7942_0131 0.77 +1.1 131,877 - Synpcc7942_0131 0.78 -1.3 131,878 + Synpcc7942_0131 0.78 +0.9 132,032 + Synpcc7942_0131 0.84 +0.7 132,109 - Synpcc7942_0131 0.86 +1.8 132,362 + -1.7 132,439 - +1.3 132,513 + +0.5 132,582 - +0.8 132,592 + -0.7 132,625 - -0.1 132,625 - +2.7 132,625 - +0.2 132,627 + -0.1 132,633 + +1.6 132,665 + +0.4 132,665 + +0.5 132,673 - +1.5 132,700 - +1.6 132,702 + +0.1 132,702 + +0.0 132,717 + -0.5 132,736 - +1.5 132,752 - +1.2 132,754 - +0.8 132,756 + +2.0 132,764 - -2.3 132,781 + -1.7 132,784 + +0.1 132,785 + +1.0 132,833 - Synpcc7942_0132 0.11 -0.4 132,835 + Synpcc7942_0132 0.11 -0.3 132,872 - Synpcc7942_0132 0.14 +1.0 132,888 + Synpcc7942_0132 0.16 +0.7 132,890 + Synpcc7942_0132 0.16 -1.7 132,903 - Synpcc7942_0132 0.17 +2.0 132,914 - Synpcc7942_0132 0.18 +0.9 132,915 - Synpcc7942_0132 0.18 +1.0 132,915 - Synpcc7942_0132 0.18 +0.5 132,916 - Synpcc7942_0132 0.19 +0.9 132,916 - Synpcc7942_0132 0.19 -1.7 132,916 - Synpcc7942_0132 0.19 +0.1 132,927 + Synpcc7942_0132 0.20 +0.1 132,935 - Synpcc7942_0132 0.20 -1.5 132,935 - Synpcc7942_0132 0.20 +0.1 132,935 - Synpcc7942_0132 0.20 -1.7 132,935 - Synpcc7942_0132 0.20 -2.3 132,949 - -0.7 132,956 - Synpcc7942_0132 0.22 -0.7 132,957 - Synpcc7942_0132 0.22 +0.6 132,972 - Synpcc7942_0132 0.24 -1.3 132,998 + Synpcc7942_0132 0.26 -1.7 133,006 - Synpcc7942_0132 0.27 -0.7 133,006 - -0.7 133,006 - Synpcc7942_0132 0.27 +0.7 133,008 + Synpcc7942_0132 0.27 -0.1 133,008 + Synpcc7942_0132 0.27 +2.8 133,016 - Synpcc7942_0132 0.28 +1.5 133,026 - -1.7 133,034 + Synpcc7942_0132 0.30 +0.8 133,041 - Synpcc7942_0132 0.30 -0.3 133,041 - Synpcc7942_0132 0.30 +0.7 133,048 + Synpcc7942_0132 0.31 +0.3 133,048 + Synpcc7942_0132 0.31 +1.5 133,101 + Synpcc7942_0132 0.36 +0.4 133,101 + Synpcc7942_0132 0.36 +0.1 133,109 - Synpcc7942_0132 0.37 -2.7 133,120 - Synpcc7942_0132 0.38 +0.9 133,120 - Synpcc7942_0132 0.38 +0.4 133,148 + Synpcc7942_0132 0.41 +0.4 133,148 + Synpcc7942_0132 0.41 +0.3 133,148 + Synpcc7942_0132 0.41 -0.7 133,156 - Synpcc7942_0132 0.41 -1.7 133,166 - Synpcc7942_0132 0.42 +1.0 133,166 - Synpcc7942_0132 0.42 +0.2 133,190 + -0.7 133,198 - Synpcc7942_0132 0.45 +0.5 133,212 + Synpcc7942_0132 0.47 -0.3 133,212 - Synpcc7942_0132 0.47 -1.1 133,228 + Synpcc7942_0132 0.48 +1.1 133,236 - Synpcc7942_0132 0.49 -0.2 133,236 - Synpcc7942_0132 0.49 -0.7 133,248 + Synpcc7942_0132 0.50 -1.3 133,257 + Synpcc7942_0132 0.51 +1.4 133,257 + Synpcc7942_0132 0.51 +1.3 133,257 + Synpcc7942_0132 0.51 -1.1 133,258 + Synpcc7942_0132 0.51 +1.8 133,266 + Synpcc7942_0132 0.52 +0.3 133,267 - Synpcc7942_0132 0.52 +1.1 133,267 - Synpcc7942_0132 0.52 +1.5 133,269 - Synpcc7942_0132 0.52 +0.7 133,269 - Synpcc7942_0132 0.52 -1.1 133,269 - Synpcc7942_0132 0.52 +0.7 133,283 + Synpcc7942_0132 0.54 +2.7 133,283 + Synpcc7942_0132 0.54 +1.3 133,291 - Synpcc7942_0132 0.54 +0.8 133,293 + Synpcc7942_0132 0.54 +0.6 133,293 + Synpcc7942_0132 0.54 -0.3 133,307 + Synpcc7942_0132 0.56 +1.6 133,308 - Synpcc7942_0132 0.56 -0.1 133,317 - Synpcc7942_0132 0.57 -0.7 133,321 + Synpcc7942_0132 0.57 +2.5 133,321 + Synpcc7942_0132 0.57 -0.1 133,329 - Synpcc7942_0132 0.58 +2.4 133,329 - Synpcc7942_0132 0.58 +1.1 133,339 - Synpcc7942_0132 0.59 +2.1 133,375 - Synpcc7942_0132 0.62 +1.5 133,381 - Synpcc7942_0132 0.63 +0.3 133,386 + Synpcc7942_0132 0.63 -2.7 133,386 + Synpcc7942_0132 0.63 -3.0 133,394 - Synpcc7942_0132 0.64 +1.8 133,394 - Synpcc7942_0132 0.64 -0.1 133,394 - Synpcc7942_0132 0.64 +0.9 133,394 - Synpcc7942_0132 0.64 +0.5 133,401 - Synpcc7942_0132 0.65 -0.3 133,435 + Synpcc7942_0132 0.68 +0.9 133,461 - Synpcc7942_0132 0.70 +2.1 133,481 - Synpcc7942_0132 0.72 +1.7 133,487 + Synpcc7942_0132 0.73 +0.1
Or see this region's nucleotide sequence