Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33240

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
2,870,780	-		RR42_RS33235	0.29	-3.7
2,870,780	-		RR42_RS33235	0.29	-4.0
2,870,844	-		RR42_RS33235	0.35	-3.2
2,870,993	+		RR42_RS33235	0.48	-1.1
2,870,993	+		RR42_RS33235	0.48	-1.3
2,870,994	-		RR42_RS33235	0.48	-3.3
2,870,994	-		RR42_RS33235	0.48	-0.9
2,870,997	+		RR42_RS33235	0.49	-2.3
2,870,998	-		RR42_RS33235	0.49	-4.2
2,871,017	-		RR42_RS33235	0.51	-2.8
2,871,061	+		RR42_RS33235	0.55	-4.3
2,871,061	+		RR42_RS33235	0.55	-3.2
2,871,061	+		RR42_RS33235	0.55	-0.9
2,871,062	-		RR42_RS33235	0.55	-2.5
2,871,069	-		RR42_RS33235	0.55	-5.5
2,871,069	-		RR42_RS33235	0.55	-3.2
2,871,163	+		RR42_RS33235	0.64	-0.9
2,871,212	+		RR42_RS33235	0.69	-2.9
2,871,213	-		RR42_RS33235	0.69	-4.7
2,871,246	-		RR42_RS33235	0.72	-3.7
2,871,246	-		RR42_RS33235	0.72	-1.9
2,871,299	-		RR42_RS33235	0.76	-5.5
2,871,407	-		RR42_RS33235	0.86	-2.1
2,871,410	+		RR42_RS33235	0.87	-0.5
2,871,410	+		RR42_RS33235	0.87	-2.6
2,871,431	+		RR42_RS33235	0.89	-4.1
2,871,500	-				-1.9
2,871,563	-				-1.2
2,871,582	-				+0.5
2,871,585	+				-2.6
2,871,586	-				+0.3
2,871,681	-		RR42_RS33240	0.10	-1.9
2,871,726	+		RR42_RS33240	0.15	-3.6
2,871,726	+		RR42_RS33240	0.15	-2.5
2,871,727	-		RR42_RS33240	0.15	-2.3
2,871,728	+		RR42_RS33240	0.15	-2.3
2,871,788	+		RR42_RS33240	0.22	-3.1
2,871,789	-		RR42_RS33240	0.22	-3.8
2,871,803	-		RR42_RS33240	0.23	-3.2
2,871,807	-		RR42_RS33240	0.24	-1.3
2,871,808	+		RR42_RS33240	0.24	-1.3
2,871,809	-		RR42_RS33240	0.24	-1.9
2,871,812	+		RR42_RS33240	0.24	-5.1
2,871,813	-		RR42_RS33240	0.25	-2.6
2,871,828	+		RR42_RS33240	0.26	+0.7
2,871,829	-		RR42_RS33240	0.26	-2.5
2,871,848	+		RR42_RS33240	0.28	-4.9
2,871,848	+		RR42_RS33240	0.28	-0.9
2,871,849	-		RR42_RS33240	0.28	-3.2
2,871,849	-		RR42_RS33240	0.28	-3.0
2,871,872	+		RR42_RS33240	0.31	-1.3
2,871,872	+		RR42_RS33240	0.31	+0.3
2,871,873	-		RR42_RS33240	0.31	-4.1
2,871,912	-		RR42_RS33240	0.35	-5.1
2,871,918	+		RR42_RS33240	0.36	-0.9
2,871,936	-		RR42_RS33240	0.38	-4.2
2,871,936	-		RR42_RS33240	0.38	-3.4
2,871,972	-		RR42_RS33240	0.42	-5.3
2,871,982	+		RR42_RS33240	0.43	-3.8
2,871,982	+		RR42_RS33240	0.43	-2.9
2,871,983	-		RR42_RS33240	0.43	-2.3
2,871,983	-		RR42_RS33240	0.43	-3.7
2,871,990	-		RR42_RS33240	0.44	-3.3
2,871,990	-		RR42_RS33240	0.44	-0.7
2,871,997	-		RR42_RS33240	0.44	-3.0
2,871,997	-		RR42_RS33240	0.44	-4.7
2,871,997	-		RR42_RS33240	0.44	-5.5
2,871,997	-		RR42_RS33240	0.44	-3.2
2,872,037	+		RR42_RS33240	0.49	-5.2
2,872,038	-		RR42_RS33240	0.49	-2.6
2,872,038	-		RR42_RS33240	0.49	-0.2
2,872,041	+		RR42_RS33240	0.49	-2.5
2,872,041	+		RR42_RS33240	0.49	-2.1
2,872,042	-		RR42_RS33240	0.49	-1.3
2,872,042	-		RR42_RS33240	0.49	-2.7
2,872,065	+		RR42_RS33240	0.52	-5.5
2,872,065	+		RR42_RS33240	0.52	-1.7
2,872,066	-		RR42_RS33240	0.52	-2.9
2,872,108	-		RR42_RS33240	0.56	-2.5
2,872,146	+		RR42_RS33240	0.60	-2.3
2,872,146	+		RR42_RS33240	0.60	-2.8
2,872,147	-		RR42_RS33240	0.60	-2.6
2,872,147	-		RR42_RS33240	0.60	-5.8
2,872,182	+		RR42_RS33240	0.64	-2.8
2,872,182	+		RR42_RS33240	0.64	-4.2
2,872,186	+		RR42_RS33240	0.65	-2.9
2,872,186	+		RR42_RS33240	0.65	-1.3
2,872,186	+		RR42_RS33240	0.65	-4.7
2,872,186	+		RR42_RS33240	0.65	-1.3
2,872,187	-		RR42_RS33240	0.65	-4.1
2,872,187	-		RR42_RS33240	0.65	-2.3
2,872,187	-		RR42_RS33240	0.65	-4.1
2,872,290	+		RR42_RS33240	0.76	-1.9
2,872,291	-		RR42_RS33240	0.76	-1.3
2,872,292	+		RR42_RS33240	0.76	-5.8
2,872,292	+		RR42_RS33240	0.76	-2.3
2,872,293	-		RR42_RS33240	0.76	-3.1
2,872,293	-		RR42_RS33240	0.76	-3.4
2,872,342	-		RR42_RS33240	0.81	-6.5
2,872,397	+		RR42_RS33240	0.87	-1.3
2,872,397	+		RR42_RS33240	0.87	-4.5
2,872,398	-		RR42_RS33240	0.87	-0.9
2,872,398	-		RR42_RS33240	0.87	-5.7
2,872,431	+				-2.3
2,872,459	+				-2.3
2,872,459	+				-2.6
2,872,459	+				-0.3
2,872,460	-				-3.0
2,872,510	+				-1.3
2,872,510	+				-2.5
2,872,511	-				-3.2
2,872,538	+				-3.6
2,872,539	-				+0.4
2,872,577	+				-0.9
2,872,578	-				-3.8
2,872,656	+				-2.8
2,872,659	-				-4.3
2,872,682	-		RR42_RS33245	0.11	+0.7
2,872,809	-		RR42_RS33245	0.20	-3.2
2,872,836	-		RR42_RS33245	0.22	-3.3
2,872,854	-		RR42_RS33245	0.23	-4.0
2,872,942	+		RR42_RS33245	0.29	-3.2
2,872,943	-		RR42_RS33245	0.29	-0.9
2,872,978	+		RR42_RS33245	0.32	-3.9
2,872,978	+		RR42_RS33245	0.32	-0.9
2,872,978	+		RR42_RS33245	0.32	-3.0
2,872,978	+		RR42_RS33245	0.32	-2.5
2,872,979	-		RR42_RS33245	0.32	+0.7
2,873,169	+		RR42_RS33245	0.45	-3.0
2,873,169	+		RR42_RS33245	0.45	-2.1
2,873,186	+		RR42_RS33245	0.46	-2.3
2,873,291	-		RR42_RS33245	0.54	-1.2
2,873,320	+		RR42_RS33245	0.56	-4.7
2,873,324	+		RR42_RS33245	0.56	-3.6
2,873,325	-		RR42_RS33245	0.56	-4.3
2,873,325	-		RR42_RS33245	0.56	-6.2
2,873,325	-		RR42_RS33245	0.56	-1.3
2,873,366	+		RR42_RS33245	0.59	-2.3
2,873,367	-		RR42_RS33245	0.59	-3.6
2,873,367	-		RR42_RS33245	0.59	-3.6
2,873,385	-		RR42_RS33245	0.60	-3.8
2,873,471	+		RR42_RS33245	0.66	-1.0