Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28850

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28845 and RR42_RS28850 are separated by 2 nucleotidesRR42_RS28850 and RR42_RS28855 are separated by 147 nucleotides RR42_RS28845: RR42_RS28845 - D-aminoacylase, at 1,824,643 to 1,826,136 _RS28845 RR42_RS28850: RR42_RS28850 - transcriptional regulator, at 1,826,139 to 1,827,032 _RS28850 RR42_RS28855: RR42_RS28855 - amino acid deaminase, at 1,827,180 to 1,828,448 _RS28855 Position (kb) 1826 1827 1828Strain fitness (log2 ratio) -1 0 1 2at 1825.268 kb on + strand, within RR42_RS28845at 1825.268 kb on + strand, within RR42_RS28845at 1825.275 kb on - strand, within RR42_RS28845at 1825.371 kb on + strand, within RR42_RS28845at 1825.371 kb on + strand, within RR42_RS28845at 1825.371 kb on + strand, within RR42_RS28845at 1825.371 kb on + strand, within RR42_RS28845at 1825.372 kb on - strand, within RR42_RS28845at 1825.547 kb on + strand, within RR42_RS28845at 1825.736 kb on + strandat 1825.737 kb on - strand, within RR42_RS28845at 1826.534 kb on - strand, within RR42_RS28850at 1826.620 kb on + strand, within RR42_RS28850at 1826.621 kb on - strand, within RR42_RS28850at 1827.109 kb on + strandat 1827.146 kb on + strandat 1827.501 kb on + strand, within RR42_RS28855at 1827.557 kb on + strand, within RR42_RS28855at 1827.605 kb on + strand, within RR42_RS28855at 1827.648 kb on + strand, within RR42_RS28855at 1827.936 kb on + strand, within RR42_RS28855

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,825,268 + RR42_RS28845 0.42 +1.8
1,825,268 + RR42_RS28845 0.42 -0.2
1,825,275 - RR42_RS28845 0.42 -0.6
1,825,371 + RR42_RS28845 0.49 -0.8
1,825,371 + RR42_RS28845 0.49 -1.1
1,825,371 + RR42_RS28845 0.49 +0.7
1,825,371 + RR42_RS28845 0.49 -0.6
1,825,372 - RR42_RS28845 0.49 +1.1
1,825,547 + RR42_RS28845 0.61 +0.7
1,825,736 + +0.4
1,825,737 - RR42_RS28845 0.73 -0.3
1,826,534 - RR42_RS28850 0.44 -0.9
1,826,620 + RR42_RS28850 0.54 -1.2
1,826,621 - RR42_RS28850 0.54 -0.5
1,827,109 + +0.9
1,827,146 + -0.1
1,827,501 + RR42_RS28855 0.25 +1.4
1,827,557 + RR42_RS28855 0.30 -0.2
1,827,605 + RR42_RS28855 0.33 -1.2
1,827,648 + RR42_RS28855 0.37 +0.0
1,827,936 + RR42_RS28855 0.60 +0.4

Or see this region's nucleotide sequence