Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26180

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26175 and RR42_RS26180 are separated by 29 nucleotidesRR42_RS26180 and RR42_RS26185 are separated by 324 nucleotides RR42_RS26175: RR42_RS26175 - gamma-glutamyltransferase, at 1,229,747 to 1,231,612 _RS26175 RR42_RS26180: RR42_RS26180 - hypothetical protein, at 1,231,642 to 1,232,490 _RS26180 RR42_RS26185: RR42_RS26185 - hypothetical protein, at 1,232,815 to 1,234,317 _RS26185 Position (kb) 1231 1232 1233Strain fitness (log2 ratio) -2 -1 0 1at 1230.708 kb on + strand, within RR42_RS26175at 1230.829 kb on + strand, within RR42_RS26175at 1230.831 kb on + strand, within RR42_RS26175at 1230.832 kb on - strand, within RR42_RS26175at 1230.832 kb on - strand, within RR42_RS26175at 1230.832 kb on - strand, within RR42_RS26175at 1230.832 kb on - strand, within RR42_RS26175at 1230.993 kb on + strand, within RR42_RS26175at 1230.994 kb on - strand, within RR42_RS26175at 1231.228 kb on - strand, within RR42_RS26175at 1231.254 kb on + strand, within RR42_RS26175at 1231.254 kb on + strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.255 kb on - strand, within RR42_RS26175at 1231.422 kb on + strand, within RR42_RS26175at 1231.422 kb on + strand, within RR42_RS26175at 1231.547 kb on + strandat 1231.547 kb on + strandat 1231.548 kb on - strandat 1231.643 kb on + strandat 1231.808 kb on - strand, within RR42_RS26180at 1231.985 kb on - strand, within RR42_RS26180at 1232.352 kb on - strand, within RR42_RS26180at 1232.421 kb on - strandat 1232.443 kb on + strandat 1232.547 kb on - strandat 1232.671 kb on - strandat 1233.017 kb on - strand, within RR42_RS26185at 1233.017 kb on - strand, within RR42_RS26185at 1233.023 kb on - strand, within RR42_RS26185at 1233.023 kb on - strand, within RR42_RS26185at 1233.046 kb on + strand, within RR42_RS26185at 1233.046 kb on + strand, within RR42_RS26185at 1233.048 kb on + strand, within RR42_RS26185at 1233.048 kb on + strand, within RR42_RS26185at 1233.048 kb on + strand, within RR42_RS26185at 1233.049 kb on - strand, within RR42_RS26185at 1233.076 kb on + strand, within RR42_RS26185at 1233.076 kb on + strand, within RR42_RS26185at 1233.077 kb on - strand, within RR42_RS26185at 1233.382 kb on + strand, within RR42_RS26185at 1233.382 kb on + strand, within RR42_RS26185at 1233.383 kb on - strand, within RR42_RS26185

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,230,708 + RR42_RS26175 0.52 +0.1
1,230,829 + RR42_RS26175 0.58 -0.6
1,230,831 + RR42_RS26175 0.58 +0.0
1,230,832 - RR42_RS26175 0.58 +0.3
1,230,832 - RR42_RS26175 0.58 -1.7
1,230,832 - RR42_RS26175 0.58 -0.2
1,230,832 - RR42_RS26175 0.58 -0.4
1,230,993 + RR42_RS26175 0.67 +0.1
1,230,994 - RR42_RS26175 0.67 +0.8
1,231,228 - RR42_RS26175 0.79 -0.2
1,231,254 + RR42_RS26175 0.81 +0.9
1,231,254 + RR42_RS26175 0.81 -0.3
1,231,255 - RR42_RS26175 0.81 -0.5
1,231,255 - RR42_RS26175 0.81 -0.3
1,231,255 - RR42_RS26175 0.81 -0.1
1,231,255 - RR42_RS26175 0.81 -1.4
1,231,255 - RR42_RS26175 0.81 +0.3
1,231,422 + RR42_RS26175 0.90 -0.0
1,231,422 + RR42_RS26175 0.90 -0.2
1,231,547 + -1.8
1,231,547 + -0.3
1,231,548 - -0.1
1,231,643 + +0.2
1,231,808 - RR42_RS26180 0.20 +1.0
1,231,985 - RR42_RS26180 0.40 -0.0
1,232,352 - RR42_RS26180 0.84 +0.4
1,232,421 - +0.3
1,232,443 + -0.1
1,232,547 - -1.8
1,232,671 - -0.2
1,233,017 - RR42_RS26185 0.13 +0.2
1,233,017 - RR42_RS26185 0.13 -0.5
1,233,023 - RR42_RS26185 0.14 -0.9
1,233,023 - RR42_RS26185 0.14 -0.1
1,233,046 + RR42_RS26185 0.15 -0.3
1,233,046 + RR42_RS26185 0.15 +0.9
1,233,048 + RR42_RS26185 0.16 -0.3
1,233,048 + RR42_RS26185 0.16 -0.6
1,233,048 + RR42_RS26185 0.16 -0.3
1,233,049 - RR42_RS26185 0.16 -0.7
1,233,076 + RR42_RS26185 0.17 +0.5
1,233,076 + RR42_RS26185 0.17 -0.5
1,233,077 - RR42_RS26185 0.17 +0.2
1,233,382 + RR42_RS26185 0.38 +0.1
1,233,382 + RR42_RS26185 0.38 +0.4
1,233,383 - RR42_RS26185 0.38 +0.2

Or see this region's nucleotide sequence