Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26175 and RR42_RS26180 are separated by 29 nucleotides RR42_RS26180 and RR42_RS26185 are separated by 324 nucleotides
RR42_RS26175: RR42_RS26175 - gamma-glutamyltransferase, at 1,229,747 to 1,231,612
_RS26175
RR42_RS26180: RR42_RS26180 - hypothetical protein, at 1,231,642 to 1,232,490
_RS26180
RR42_RS26185: RR42_RS26185 - hypothetical protein, at 1,232,815 to 1,234,317
_RS26185
Position (kb)
1231
1232
1233 Strain fitness (log2 ratio)
-2
-1
0
1 at 1230.708 kb on + strand, within RR42_RS26175 at 1230.829 kb on + strand, within RR42_RS26175 at 1230.831 kb on + strand, within RR42_RS26175 at 1230.832 kb on - strand, within RR42_RS26175 at 1230.832 kb on - strand, within RR42_RS26175 at 1230.832 kb on - strand, within RR42_RS26175 at 1230.832 kb on - strand, within RR42_RS26175 at 1230.993 kb on + strand, within RR42_RS26175 at 1230.994 kb on - strand, within RR42_RS26175 at 1231.228 kb on - strand, within RR42_RS26175 at 1231.254 kb on + strand, within RR42_RS26175 at 1231.254 kb on + strand, within RR42_RS26175 at 1231.255 kb on - strand, within RR42_RS26175 at 1231.255 kb on - strand, within RR42_RS26175 at 1231.255 kb on - strand, within RR42_RS26175 at 1231.255 kb on - strand, within RR42_RS26175 at 1231.255 kb on - strand, within RR42_RS26175 at 1231.422 kb on + strand, within RR42_RS26175 at 1231.422 kb on + strand, within RR42_RS26175 at 1231.547 kb on + strand at 1231.547 kb on + strand at 1231.548 kb on - strand at 1231.643 kb on + strand at 1231.808 kb on - strand, within RR42_RS26180 at 1231.985 kb on - strand, within RR42_RS26180 at 1232.352 kb on - strand, within RR42_RS26180 at 1232.421 kb on - strand at 1232.443 kb on + strand at 1232.547 kb on - strand at 1232.671 kb on - strand at 1233.017 kb on - strand, within RR42_RS26185 at 1233.017 kb on - strand, within RR42_RS26185 at 1233.023 kb on - strand, within RR42_RS26185 at 1233.023 kb on - strand, within RR42_RS26185 at 1233.046 kb on + strand, within RR42_RS26185 at 1233.046 kb on + strand, within RR42_RS26185 at 1233.048 kb on + strand, within RR42_RS26185 at 1233.048 kb on + strand, within RR42_RS26185 at 1233.048 kb on + strand, within RR42_RS26185 at 1233.049 kb on - strand, within RR42_RS26185 at 1233.076 kb on + strand, within RR42_RS26185 at 1233.076 kb on + strand, within RR42_RS26185 at 1233.077 kb on - strand, within RR42_RS26185 at 1233.382 kb on + strand, within RR42_RS26185 at 1233.382 kb on + strand, within RR42_RS26185 at 1233.383 kb on - strand, within RR42_RS26185
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,230,708 + RR42_RS26175 0.52 +0.1 1,230,829 + RR42_RS26175 0.58 -0.6 1,230,831 + RR42_RS26175 0.58 +0.0 1,230,832 - RR42_RS26175 0.58 +0.3 1,230,832 - RR42_RS26175 0.58 -1.7 1,230,832 - RR42_RS26175 0.58 -0.2 1,230,832 - RR42_RS26175 0.58 -0.4 1,230,993 + RR42_RS26175 0.67 +0.1 1,230,994 - RR42_RS26175 0.67 +0.8 1,231,228 - RR42_RS26175 0.79 -0.2 1,231,254 + RR42_RS26175 0.81 +0.9 1,231,254 + RR42_RS26175 0.81 -0.3 1,231,255 - RR42_RS26175 0.81 -0.5 1,231,255 - RR42_RS26175 0.81 -0.3 1,231,255 - RR42_RS26175 0.81 -0.1 1,231,255 - RR42_RS26175 0.81 -1.4 1,231,255 - RR42_RS26175 0.81 +0.3 1,231,422 + RR42_RS26175 0.90 -0.0 1,231,422 + RR42_RS26175 0.90 -0.2 1,231,547 + -1.8 1,231,547 + -0.3 1,231,548 - -0.1 1,231,643 + +0.2 1,231,808 - RR42_RS26180 0.20 +1.0 1,231,985 - RR42_RS26180 0.40 -0.0 1,232,352 - RR42_RS26180 0.84 +0.4 1,232,421 - +0.3 1,232,443 + -0.1 1,232,547 - -1.8 1,232,671 - -0.2 1,233,017 - RR42_RS26185 0.13 +0.2 1,233,017 - RR42_RS26185 0.13 -0.5 1,233,023 - RR42_RS26185 0.14 -0.9 1,233,023 - RR42_RS26185 0.14 -0.1 1,233,046 + RR42_RS26185 0.15 -0.3 1,233,046 + RR42_RS26185 0.15 +0.9 1,233,048 + RR42_RS26185 0.16 -0.3 1,233,048 + RR42_RS26185 0.16 -0.6 1,233,048 + RR42_RS26185 0.16 -0.3 1,233,049 - RR42_RS26185 0.16 -0.7 1,233,076 + RR42_RS26185 0.17 +0.5 1,233,076 + RR42_RS26185 0.17 -0.5 1,233,077 - RR42_RS26185 0.17 +0.2 1,233,382 + RR42_RS26185 0.38 +0.1 1,233,382 + RR42_RS26185 0.38 +0.4 1,233,383 - RR42_RS26185 0.38 +0.2
Or see this region's nucleotide sequence