Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23990 and RR42_RS23995 are separated by 485 nucleotides RR42_RS23995 and RR42_RS24000 are separated by 389 nucleotides
RR42_RS23990: RR42_RS23990 - hypothetical protein, at 708,291 to 708,755
_RS23990
RR42_RS23995: RR42_RS23995 - hypothetical protein, at 709,241 to 709,486
_RS23995
RR42_RS24000: RR42_RS24000 - hypothetical protein, at 709,876 to 710,391
_RS24000
Position (kb) 709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 708.261 kb on + strand at 708.262 kb on - strand at 708.271 kb on + strand at 708.271 kb on + strand at 708.272 kb on - strand at 708.272 kb on - strand at 708.294 kb on + strand at 708.294 kb on + strand at 708.295 kb on - strand at 708.295 kb on - strand at 708.295 kb on - strand at 708.295 kb on - strand at 708.314 kb on + strand at 708.455 kb on + strand, within RR42_RS23990 at 708.484 kb on + strand, within RR42_RS23990 at 708.484 kb on + strand, within RR42_RS23990 at 708.484 kb on + strand, within RR42_RS23990 at 708.485 kb on - strand, within RR42_RS23990 at 708.525 kb on + strand, within RR42_RS23990 at 708.526 kb on - strand, within RR42_RS23990 at 708.559 kb on - strand, within RR42_RS23990 at 708.559 kb on - strand, within RR42_RS23990 at 708.593 kb on + strand, within RR42_RS23990 at 708.678 kb on - strand, within RR42_RS23990 at 708.775 kb on - strand at 708.978 kb on + strand at 708.984 kb on + strand at 708.985 kb on - strand at 709.058 kb on - strand at 709.177 kb on + strand at 709.177 kb on + strand at 709.178 kb on - strand at 709.223 kb on + strand at 709.279 kb on - strand, within RR42_RS23995 at 709.295 kb on + strand, within RR42_RS23995 at 709.295 kb on + strand, within RR42_RS23995 at 709.337 kb on + strand, within RR42_RS23995 at 709.337 kb on + strand, within RR42_RS23995 at 709.567 kb on + strand at 709.568 kb on - strand at 709.655 kb on + strand at 709.707 kb on - strand at 709.742 kb on + strand at 709.743 kb on - strand at 709.753 kb on - strand at 709.765 kb on + strand at 709.765 kb on + strand at 709.766 kb on - strand at 709.766 kb on - strand at 709.896 kb on - strand at 709.966 kb on + strand, within RR42_RS24000 at 709.999 kb on + strand, within RR42_RS24000 at 710.000 kb on - strand, within RR42_RS24000 at 710.000 kb on - strand, within RR42_RS24000 at 710.072 kb on + strand, within RR42_RS24000 at 710.073 kb on - strand, within RR42_RS24000 at 710.073 kb on - strand, within RR42_RS24000 at 710.227 kb on + strand, within RR42_RS24000 at 710.227 kb on + strand, within RR42_RS24000 at 710.227 kb on + strand, within RR42_RS24000 at 710.228 kb on - strand, within RR42_RS24000 at 710.373 kb on + strand at 710.464 kb on + strand at 710.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 708,261 + +0.3 708,262 - +1.1 708,271 + +0.7 708,271 + +0.2 708,272 - -1.1 708,272 - -2.0 708,294 + -0.4 708,294 + +0.3 708,295 - +0.2 708,295 - +0.4 708,295 - +0.0 708,295 - +0.3 708,314 + +0.9 708,455 + RR42_RS23990 0.35 +1.3 708,484 + RR42_RS23990 0.42 +0.3 708,484 + RR42_RS23990 0.42 +0.2 708,484 + RR42_RS23990 0.42 -0.2 708,485 - RR42_RS23990 0.42 +1.9 708,525 + RR42_RS23990 0.50 -0.4 708,526 - RR42_RS23990 0.51 +0.2 708,559 - RR42_RS23990 0.58 -0.1 708,559 - RR42_RS23990 0.58 +0.5 708,593 + RR42_RS23990 0.65 -0.4 708,678 - RR42_RS23990 0.83 -0.2 708,775 - +0.4 708,978 + -0.7 708,984 + -0.3 708,985 - -0.3 709,058 - +1.1 709,177 + +0.7 709,177 + -0.7 709,178 - +1.2 709,223 + +0.1 709,279 - RR42_RS23995 0.15 +0.6 709,295 + RR42_RS23995 0.22 +0.5 709,295 + RR42_RS23995 0.22 +2.2 709,337 + RR42_RS23995 0.39 -0.7 709,337 + RR42_RS23995 0.39 +0.9 709,567 + +0.1 709,568 - -0.9 709,655 + -0.3 709,707 - -0.1 709,742 + +1.0 709,743 - -0.2 709,753 - -2.9 709,765 + +0.1 709,765 + -0.4 709,766 - -0.1 709,766 - +0.1 709,896 - -0.5 709,966 + RR42_RS24000 0.17 +1.8 709,999 + RR42_RS24000 0.24 +0.2 710,000 - RR42_RS24000 0.24 -0.0 710,000 - RR42_RS24000 0.24 -0.7 710,072 + RR42_RS24000 0.38 -0.1 710,073 - RR42_RS24000 0.38 +0.0 710,073 - RR42_RS24000 0.38 -0.6 710,227 + RR42_RS24000 0.68 +0.6 710,227 + RR42_RS24000 0.68 +0.3 710,227 + RR42_RS24000 0.68 +0.3 710,228 - RR42_RS24000 0.68 -0.7 710,373 + +0.3 710,464 + +0.9 710,464 + +1.2
Or see this region's nucleotide sequence