Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23270

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23265 and RR42_RS23270 are separated by 232 nucleotidesRR42_RS23270 and RR42_RS23275 are separated by 82 nucleotides RR42_RS23265: RR42_RS23265 - MFS transporter, at 550,015 to 551,232 _RS23265 RR42_RS23270: RR42_RS23270 - pyridoxamine 5'-phosphate oxidase, at 551,465 to 551,980 _RS23270 RR42_RS23275: RR42_RS23275 - 2-nitropropane dioxygenase, at 552,063 to 553,070 _RS23275 Position (kb) 551 552Strain fitness (log2 ratio) -2 -1 0 1 2at 550.511 kb on + strand, within RR42_RS23265at 550.511 kb on + strand, within RR42_RS23265at 550.719 kb on + strand, within RR42_RS23265at 550.720 kb on - strand, within RR42_RS23265at 550.720 kb on - strand, within RR42_RS23265at 550.983 kb on - strand, within RR42_RS23265at 551.268 kb on - strandat 551.276 kb on + strandat 551.313 kb on + strandat 551.336 kb on - strandat 551.360 kb on - strandat 551.362 kb on - strandat 551.399 kb on + strandat 551.400 kb on - strandat 551.511 kb on + strandat 551.671 kb on - strand, within RR42_RS23270at 551.803 kb on - strand, within RR42_RS23270at 551.866 kb on + strand, within RR42_RS23270at 551.905 kb on - strand, within RR42_RS23270at 551.980 kb on + strandat 551.980 kb on + strandat 552.028 kb on + strandat 552.028 kb on + strandat 552.029 kb on - strandat 552.035 kb on - strandat 552.035 kb on - strandat 552.235 kb on - strand, within RR42_RS23275at 552.259 kb on + strand, within RR42_RS23275at 552.259 kb on + strand, within RR42_RS23275at 552.260 kb on - strand, within RR42_RS23275at 552.334 kb on + strand, within RR42_RS23275at 552.334 kb on + strand, within RR42_RS23275at 552.334 kb on + strand, within RR42_RS23275at 552.335 kb on - strand, within RR42_RS23275at 552.335 kb on - strand, within RR42_RS23275at 552.368 kb on - strand, within RR42_RS23275at 552.409 kb on + strand, within RR42_RS23275at 552.410 kb on - strand, within RR42_RS23275at 552.461 kb on - strand, within RR42_RS23275at 552.510 kb on - strand, within RR42_RS23275at 552.510 kb on - strand, within RR42_RS23275at 552.513 kb on + strand, within RR42_RS23275at 552.513 kb on + strand, within RR42_RS23275at 552.513 kb on + strand, within RR42_RS23275at 552.514 kb on - strand, within RR42_RS23275at 552.701 kb on - strand, within RR42_RS23275at 552.755 kb on + strand, within RR42_RS23275at 552.969 kb on + strand, within RR42_RS23275

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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550,511 + RR42_RS23265 0.41 -0.7
550,511 + RR42_RS23265 0.41 +0.2
550,719 + RR42_RS23265 0.58 +1.3
550,720 - RR42_RS23265 0.58 -0.1
550,720 - RR42_RS23265 0.58 -0.6
550,983 - RR42_RS23265 0.79 -0.2
551,268 - -1.9
551,276 + +0.3
551,313 + -0.2
551,336 - +2.3
551,360 - +0.1
551,362 - -0.0
551,399 + +0.6
551,400 - -0.7
551,511 + +0.6
551,671 - RR42_RS23270 0.40 +1.1
551,803 - RR42_RS23270 0.66 +0.6
551,866 + RR42_RS23270 0.78 +0.2
551,905 - RR42_RS23270 0.85 +0.4
551,980 + -0.2
551,980 + -0.3
552,028 + +0.2
552,028 + +0.0
552,029 - -1.2
552,035 - +0.3
552,035 - -0.1
552,235 - RR42_RS23275 0.17 -2.0
552,259 + RR42_RS23275 0.19 +0.6
552,259 + RR42_RS23275 0.19 -1.1
552,260 - RR42_RS23275 0.20 -0.0
552,334 + RR42_RS23275 0.27 +0.6
552,334 + RR42_RS23275 0.27 -0.4
552,334 + RR42_RS23275 0.27 -0.3
552,335 - RR42_RS23275 0.27 +1.9
552,335 - RR42_RS23275 0.27 +0.9
552,368 - RR42_RS23275 0.30 +0.3
552,409 + RR42_RS23275 0.34 -0.1
552,410 - RR42_RS23275 0.34 -1.4
552,461 - RR42_RS23275 0.39 -0.8
552,510 - RR42_RS23275 0.44 -2.1
552,510 - RR42_RS23275 0.44 -0.9
552,513 + RR42_RS23275 0.45 -0.5
552,513 + RR42_RS23275 0.45 -0.2
552,513 + RR42_RS23275 0.45 +0.2
552,514 - RR42_RS23275 0.45 -0.5
552,701 - RR42_RS23275 0.63 +0.4
552,755 + RR42_RS23275 0.69 -0.3
552,969 + RR42_RS23275 0.90 -0.0

Or see this region's nucleotide sequence