Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21600 and RR42_RS21605 overlap by 20 nucleotides RR42_RS21605 and RR42_RS21610 are separated by 443 nucleotides RR42_RS21610 and RR42_RS21615 are separated by 414 nucleotides
RR42_RS21600: RR42_RS21600 - inorganic pyrophosphatase/exopolyphosphatase, at 173,971 to 174,999
_RS21600
RR42_RS21605: RR42_RS21605 - S-adenosylhomocysteine hydrolase, at 174,980 to 175,387
_RS21605
RR42_RS21610: RR42_RS21610 - MFS transporter permease, at 175,831 to 177,141
_RS21610
RR42_RS21615: RR42_RS21615 - alcohol dehydrogenase, at 177,556 to 180,558
_RS21615
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 174.999 kb on + strand at 175.101 kb on + strand, within RR42_RS21605 at 175.101 kb on + strand, within RR42_RS21605 at 175.101 kb on + strand, within RR42_RS21605 at 175.101 kb on + strand, within RR42_RS21605 at 175.418 kb on + strand at 175.418 kb on + strand at 175.427 kb on + strand at 175.428 kb on - strand at 175.593 kb on + strand at 175.593 kb on + strand at 175.593 kb on + strand at 175.593 kb on + strand at 175.594 kb on - strand at 175.594 kb on - strand at 175.594 kb on - strand at 175.594 kb on - strand at 175.594 kb on - strand at 175.705 kb on + strand at 175.705 kb on + strand at 175.706 kb on - strand at 175.706 kb on - strand at 175.706 kb on - strand at 175.709 kb on + strand at 175.709 kb on + strand at 175.710 kb on - strand at 175.956 kb on - strand at 176.080 kb on + strand, within RR42_RS21610 at 176.080 kb on + strand, within RR42_RS21610 at 176.081 kb on - strand, within RR42_RS21610 at 176.081 kb on - strand, within RR42_RS21610 at 176.081 kb on - strand, within RR42_RS21610 at 176.339 kb on + strand, within RR42_RS21610 at 176.339 kb on + strand, within RR42_RS21610 at 176.516 kb on + strand, within RR42_RS21610 at 176.516 kb on + strand, within RR42_RS21610 at 176.715 kb on - strand, within RR42_RS21610 at 176.715 kb on - strand, within RR42_RS21610 at 176.715 kb on - strand, within RR42_RS21610 at 176.900 kb on - strand, within RR42_RS21610 at 176.916 kb on - strand, within RR42_RS21610 at 176.948 kb on + strand, within RR42_RS21610 at 176.949 kb on - strand, within RR42_RS21610 at 177.032 kb on + strand at 177.033 kb on - strand at 177.077 kb on + strand at 177.078 kb on - strand at 177.104 kb on - strand at 177.106 kb on + strand at 177.129 kb on - strand at 177.134 kb on + strand at 177.134 kb on + strand at 177.170 kb on + strand at 177.272 kb on - strand at 177.466 kb on + strand at 177.558 kb on - strand at 177.615 kb on + strand at 177.615 kb on + strand at 177.724 kb on - strand at 177.724 kb on - strand at 177.726 kb on - strand at 177.890 kb on + strand, within RR42_RS21615 at 178.010 kb on + strand, within RR42_RS21615 at 178.010 kb on + strand, within RR42_RS21615 at 178.011 kb on - strand, within RR42_RS21615 at 178.011 kb on - strand, within RR42_RS21615
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 174,999 + +0.1 175,101 + RR42_RS21605 0.30 -0.2 175,101 + RR42_RS21605 0.30 -2.1 175,101 + RR42_RS21605 0.30 +1.0 175,101 + RR42_RS21605 0.30 -0.1 175,418 + -0.3 175,418 + -0.9 175,427 + +0.1 175,428 - -1.3 175,593 + -1.7 175,593 + -0.4 175,593 + -1.0 175,593 + -0.4 175,594 - -1.3 175,594 - -0.0 175,594 - +0.5 175,594 - -0.5 175,594 - -0.7 175,705 + +0.1 175,705 + -0.1 175,706 - -0.3 175,706 - -0.5 175,706 - -0.5 175,709 + +0.7 175,709 + -1.2 175,710 - -0.4 175,956 - +0.1 176,080 + RR42_RS21610 0.19 -3.3 176,080 + RR42_RS21610 0.19 +0.1 176,081 - RR42_RS21610 0.19 +2.0 176,081 - RR42_RS21610 0.19 +0.9 176,081 - RR42_RS21610 0.19 +0.3 176,339 + RR42_RS21610 0.39 -0.1 176,339 + RR42_RS21610 0.39 -0.4 176,516 + RR42_RS21610 0.52 +0.2 176,516 + RR42_RS21610 0.52 -0.0 176,715 - RR42_RS21610 0.67 +0.5 176,715 - RR42_RS21610 0.67 -0.1 176,715 - RR42_RS21610 0.67 +2.1 176,900 - RR42_RS21610 0.82 +0.9 176,916 - RR42_RS21610 0.83 +0.3 176,948 + RR42_RS21610 0.85 -0.3 176,949 - RR42_RS21610 0.85 -0.4 177,032 + -0.7 177,033 - +1.1 177,077 + +0.5 177,078 - -0.3 177,104 - +0.2 177,106 + +0.4 177,129 - -0.8 177,134 + -0.0 177,134 + +0.1 177,170 + +1.0 177,272 - +1.2 177,466 + -0.4 177,558 - -1.0 177,615 + +0.6 177,615 + +0.5 177,724 - -0.9 177,724 - +0.0 177,726 - -0.0 177,890 + RR42_RS21615 0.11 -0.4 178,010 + RR42_RS21615 0.15 -0.4 178,010 + RR42_RS21615 0.15 -1.2 178,011 - RR42_RS21615 0.15 -0.2 178,011 - RR42_RS21615 0.15 +0.3
Or see this region's nucleotide sequence