Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21555 and RR42_RS21560 are separated by 11 nucleotides RR42_RS21560 and RR42_RS21565 are separated by 120 nucleotides
RR42_RS21555: RR42_RS21555 - membrane protein, at 161,530 to 162,519
_RS21555
RR42_RS21560: RR42_RS21560 - hypothetical protein, at 162,531 to 163,229
_RS21560
RR42_RS21565: RR42_RS21565 - hypothetical protein, at 163,350 to 164,309
_RS21565
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 161.734 kb on + strand, within RR42_RS21555 at 161.735 kb on - strand, within RR42_RS21555 at 161.831 kb on - strand, within RR42_RS21555 at 161.831 kb on - strand, within RR42_RS21555 at 161.944 kb on + strand, within RR42_RS21555 at 161.944 kb on + strand, within RR42_RS21555 at 162.043 kb on + strand, within RR42_RS21555 at 162.043 kb on + strand, within RR42_RS21555 at 162.043 kb on + strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.044 kb on - strand, within RR42_RS21555 at 162.278 kb on + strand, within RR42_RS21555 at 162.316 kb on + strand, within RR42_RS21555 at 162.338 kb on + strand, within RR42_RS21555 at 162.387 kb on + strand, within RR42_RS21555 at 162.548 kb on - strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.616 kb on + strand, within RR42_RS21560 at 162.617 kb on - strand, within RR42_RS21560 at 162.678 kb on + strand, within RR42_RS21560 at 162.761 kb on + strand, within RR42_RS21560 at 162.871 kb on + strand, within RR42_RS21560 at 162.872 kb on - strand, within RR42_RS21560 at 163.240 kb on + strand at 163.278 kb on + strand at 163.278 kb on + strand at 163.278 kb on + strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.393 kb on + strand at 163.729 kb on + strand, within RR42_RS21565 at 163.729 kb on + strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.837 kb on + strand, within RR42_RS21565 at 163.838 kb on - strand, within RR42_RS21565 at 163.838 kb on - strand, within RR42_RS21565 at 164.034 kb on + strand, within RR42_RS21565 at 164.221 kb on + strand at 164.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 161,734 + RR42_RS21555 0.21 +0.5 161,735 - RR42_RS21555 0.21 +0.4 161,831 - RR42_RS21555 0.30 +0.2 161,831 - RR42_RS21555 0.30 +0.1 161,944 + RR42_RS21555 0.42 +0.6 161,944 + RR42_RS21555 0.42 +0.3 162,043 + RR42_RS21555 0.52 +0.8 162,043 + RR42_RS21555 0.52 -1.2 162,043 + RR42_RS21555 0.52 +0.2 162,044 - RR42_RS21555 0.52 -0.2 162,044 - RR42_RS21555 0.52 +0.5 162,044 - RR42_RS21555 0.52 +0.4 162,044 - RR42_RS21555 0.52 +0.1 162,044 - RR42_RS21555 0.52 -0.4 162,278 + RR42_RS21555 0.76 +0.2 162,316 + RR42_RS21555 0.79 +0.3 162,338 + RR42_RS21555 0.82 -1.4 162,387 + RR42_RS21555 0.87 +0.1 162,548 - -1.1 162,580 + -0.2 162,580 + -1.1 162,580 + +3.4 162,580 + +0.1 162,580 + +0.6 162,581 - +0.0 162,581 - -2.2 162,581 - -1.4 162,581 - -0.2 162,581 - +0.3 162,616 + RR42_RS21560 0.12 -0.1 162,617 - RR42_RS21560 0.12 -0.1 162,678 + RR42_RS21560 0.21 +0.1 162,761 + RR42_RS21560 0.33 -0.5 162,871 + RR42_RS21560 0.49 +0.5 162,872 - RR42_RS21560 0.49 -1.2 163,240 + +0.2 163,278 + -0.7 163,278 + +0.1 163,278 + +0.9 163,279 - +0.0 163,279 - +0.1 163,279 - +0.1 163,279 - +0.1 163,393 + -0.4 163,729 + RR42_RS21565 0.39 +0.1 163,729 + RR42_RS21565 0.39 -0.1 163,730 - RR42_RS21565 0.40 +0.2 163,730 - RR42_RS21565 0.40 -1.2 163,730 - RR42_RS21565 0.40 -1.3 163,730 - RR42_RS21565 0.40 -0.1 163,837 + RR42_RS21565 0.51 -0.1 163,838 - RR42_RS21565 0.51 +0.3 163,838 - RR42_RS21565 0.51 -0.7 164,034 + RR42_RS21565 0.71 -0.2 164,221 + -0.2 164,222 - -0.2
Or see this region's nucleotide sequence