Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21170 and RR42_RS21175 are separated by 31 nucleotides RR42_RS21175 and RR42_RS21180 are separated by 54 nucleotides RR42_RS21180 and RR42_RS21185 are separated by 172 nucleotides
RR42_RS21170: RR42_RS21170 - MBL fold metallo-hydrolase, at 75,003 to 76,004
_RS21170
RR42_RS21175: RR42_RS21175 - transporter, at 76,036 to 76,470
_RS21175
RR42_RS21180: RR42_RS21180 - GNAT family acetyltransferase, at 76,525 to 76,914
_RS21180
RR42_RS21185: RR42_RS21185 - AMP nucleosidase, at 77,087 to 78,583
_RS21185
Position (kb) 76
77 Strain fitness (log2 ratio) -2
-1
0
1
2 at 75.141 kb on + strand, within RR42_RS21170 at 75.142 kb on - strand, within RR42_RS21170 at 75.142 kb on - strand, within RR42_RS21170 at 75.144 kb on + strand, within RR42_RS21170 at 75.144 kb on + strand, within RR42_RS21170 at 75.145 kb on - strand, within RR42_RS21170 at 75.183 kb on + strand, within RR42_RS21170 at 75.183 kb on + strand, within RR42_RS21170 at 75.183 kb on + strand, within RR42_RS21170 at 75.183 kb on + strand, within RR42_RS21170 at 75.192 kb on + strand, within RR42_RS21170 at 75.193 kb on - strand, within RR42_RS21170 at 75.241 kb on + strand, within RR42_RS21170 at 75.241 kb on + strand, within RR42_RS21170 at 75.241 kb on + strand, within RR42_RS21170 at 75.242 kb on - strand, within RR42_RS21170 at 75.242 kb on - strand, within RR42_RS21170 at 75.242 kb on - strand, within RR42_RS21170 at 75.242 kb on - strand, within RR42_RS21170 at 75.306 kb on + strand, within RR42_RS21170 at 75.307 kb on - strand, within RR42_RS21170 at 75.307 kb on - strand, within RR42_RS21170 at 75.307 kb on - strand, within RR42_RS21170 at 75.371 kb on + strand, within RR42_RS21170 at 75.450 kb on - strand, within RR42_RS21170 at 75.516 kb on + strand, within RR42_RS21170 at 75.516 kb on + strand, within RR42_RS21170 at 75.516 kb on + strand, within RR42_RS21170 at 75.516 kb on + strand, within RR42_RS21170 at 75.516 kb on + strand, within RR42_RS21170 at 75.517 kb on - strand, within RR42_RS21170 at 75.541 kb on - strand, within RR42_RS21170 at 75.726 kb on + strand, within RR42_RS21170 at 75.726 kb on + strand, within RR42_RS21170 at 75.727 kb on - strand, within RR42_RS21170 at 75.957 kb on + strand at 76.002 kb on + strand at 76.006 kb on - strand at 76.006 kb on - strand at 76.006 kb on - strand at 76.051 kb on + strand at 76.052 kb on - strand at 76.211 kb on + strand, within RR42_RS21175 at 76.211 kb on + strand, within RR42_RS21175 at 76.211 kb on + strand, within RR42_RS21175 at 76.212 kb on - strand, within RR42_RS21175 at 76.715 kb on + strand, within RR42_RS21180 at 76.938 kb on - strand at 77.020 kb on + strand at 77.020 kb on + strand at 77.083 kb on + strand at 77.189 kb on + strand at 77.273 kb on + strand, within RR42_RS21185 at 77.360 kb on + strand, within RR42_RS21185 at 77.360 kb on + strand, within RR42_RS21185 at 77.400 kb on - strand, within RR42_RS21185 at 77.402 kb on + strand, within RR42_RS21185 at 77.428 kb on - strand, within RR42_RS21185
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 75,141 + RR42_RS21170 0.14 -0.6 75,142 - RR42_RS21170 0.14 -1.9 75,142 - RR42_RS21170 0.14 -0.2 75,144 + RR42_RS21170 0.14 -0.4 75,144 + RR42_RS21170 0.14 +0.1 75,145 - RR42_RS21170 0.14 -0.5 75,183 + RR42_RS21170 0.18 +0.8 75,183 + RR42_RS21170 0.18 -0.4 75,183 + RR42_RS21170 0.18 -0.5 75,183 + RR42_RS21170 0.18 +1.2 75,192 + RR42_RS21170 0.19 -0.6 75,193 - RR42_RS21170 0.19 +0.8 75,241 + RR42_RS21170 0.24 -0.4 75,241 + RR42_RS21170 0.24 -0.3 75,241 + RR42_RS21170 0.24 +0.2 75,242 - RR42_RS21170 0.24 -2.5 75,242 - RR42_RS21170 0.24 +0.9 75,242 - RR42_RS21170 0.24 -0.2 75,242 - RR42_RS21170 0.24 +0.3 75,306 + RR42_RS21170 0.30 -0.9 75,307 - RR42_RS21170 0.30 -1.4 75,307 - RR42_RS21170 0.30 +1.1 75,307 - RR42_RS21170 0.30 +1.3 75,371 + RR42_RS21170 0.37 -0.4 75,450 - RR42_RS21170 0.45 +0.2 75,516 + RR42_RS21170 0.51 +0.1 75,516 + RR42_RS21170 0.51 -0.2 75,516 + RR42_RS21170 0.51 -0.6 75,516 + RR42_RS21170 0.51 +0.7 75,516 + RR42_RS21170 0.51 +0.2 75,517 - RR42_RS21170 0.51 -0.1 75,541 - RR42_RS21170 0.54 +1.8 75,726 + RR42_RS21170 0.72 +0.4 75,726 + RR42_RS21170 0.72 -0.4 75,727 - RR42_RS21170 0.72 -0.7 75,957 + +0.6 76,002 + -0.2 76,006 - -0.2 76,006 - -0.3 76,006 - +0.9 76,051 + -0.8 76,052 - -0.1 76,211 + RR42_RS21175 0.40 +0.2 76,211 + RR42_RS21175 0.40 +0.0 76,211 + RR42_RS21175 0.40 +0.9 76,212 - RR42_RS21175 0.40 +0.8 76,715 + RR42_RS21180 0.49 +0.2 76,938 - +0.1 77,020 + +1.2 77,020 + -0.1 77,083 + -0.3 77,189 + +0.6 77,273 + RR42_RS21185 0.12 +0.5 77,360 + RR42_RS21185 0.18 -0.6 77,360 + RR42_RS21185 0.18 +0.2 77,400 - RR42_RS21185 0.21 +0.4 77,402 + RR42_RS21185 0.21 -0.3 77,428 - RR42_RS21185 0.23 -0.4
Or see this region's nucleotide sequence