Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19115 and RR42_RS19120 are separated by 159 nucleotides RR42_RS19120 and RR42_RS19125 are separated by 161 nucleotides RR42_RS19125 and RR42_RS19130 are separated by 182 nucleotides
RR42_RS19115: RR42_RS19115 - cation tolerance protein CutA, at 4,143,271 to 4,143,615
_RS19115
RR42_RS19120: RR42_RS19120 - 50S ribosomal protein L17, at 4,143,775 to 4,144,170
_RS19120
RR42_RS19125: RR42_RS19125 - DNA-directed RNA polymerase subunit alpha, at 4,144,332 to 4,145,312
_RS19125
RR42_RS19130: RR42_RS19130 - 30S ribosomal protein S4, at 4,145,495 to 4,146,118
_RS19130
Position (kb)
4144
4145
4146 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4143.381 kb on - strand, within RR42_RS19115 at 4143.419 kb on + strand, within RR42_RS19115 at 4143.420 kb on - strand, within RR42_RS19115 at 4143.489 kb on - strand, within RR42_RS19115 at 4143.489 kb on - strand, within RR42_RS19115 at 4143.697 kb on + strand at 4143.697 kb on + strand at 4143.698 kb on - strand at 4143.698 kb on - strand at 4143.698 kb on - strand at 4143.713 kb on + strand at 4143.714 kb on - strand at 4143.714 kb on - strand at 4143.714 kb on - strand at 4144.334 kb on - strand at 4144.334 kb on - strand at 4144.334 kb on - strand at 4144.334 kb on - strand at 4144.334 kb on - strand at 4145.399 kb on - strand at 4145.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 4,143,381 - RR42_RS19115 0.32 +0.0 4,143,419 + RR42_RS19115 0.43 -1.8 4,143,420 - RR42_RS19115 0.43 -0.1 4,143,489 - RR42_RS19115 0.63 -0.4 4,143,489 - RR42_RS19115 0.63 -0.8 4,143,697 + -1.4 4,143,697 + -0.2 4,143,698 - +0.5 4,143,698 - +0.5 4,143,698 - -0.2 4,143,713 + +0.3 4,143,714 - -0.7 4,143,714 - -0.6 4,143,714 - +0.5 4,144,334 - -0.2 4,144,334 - +0.5 4,144,334 - +1.2 4,144,334 - +2.2 4,144,334 - -1.4 4,145,399 - -0.7 4,145,399 - +0.3
Or see this region's nucleotide sequence