Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09415 and RR42_RS09420 are separated by 542 nucleotides RR42_RS09420 and RR42_RS09425 are separated by 41 nucleotides
RR42_RS09415: RR42_RS09415 - allantoate amidohydrolase, at 1,996,990 to 1,998,243
_RS09415
RR42_RS09420: RR42_RS09420 - TetR family transcriptional regulator, at 1,998,786 to 1,999,484
_RS09420
RR42_RS09425: RR42_RS09425 - carotenoid oxygenase, at 1,999,526 to 2,000,914
_RS09425
Position (kb)
1998
1999
2000 Strain fitness (log2 ratio)
-2
-1
0
1 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1998.119 kb on + strand at 1998.119 kb on + strand at 1998.150 kb on - strand at 1998.424 kb on - strand at 1998.424 kb on - strand at 1998.553 kb on + strand at 1998.553 kb on + strand at 1998.553 kb on + strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.564 kb on + strand at 1998.564 kb on + strand at 1998.565 kb on - strand at 1998.565 kb on - strand at 1999.140 kb on + strand, within RR42_RS09420 at 1999.140 kb on + strand, within RR42_RS09420 at 1999.140 kb on + strand, within RR42_RS09420 at 1999.141 kb on - strand, within RR42_RS09420 at 1999.279 kb on + strand, within RR42_RS09420 at 1999.280 kb on - strand, within RR42_RS09420 at 1999.482 kb on + strand at 1999.583 kb on + strand at 1999.583 kb on + strand at 1999.627 kb on + strand at 1999.848 kb on + strand, within RR42_RS09425 at 1999.848 kb on + strand, within RR42_RS09425 at 1999.849 kb on - strand, within RR42_RS09425 at 1999.849 kb on - strand, within RR42_RS09425 at 1999.935 kb on + strand, within RR42_RS09425 at 1999.936 kb on - strand, within RR42_RS09425 at 1999.936 kb on - strand, within RR42_RS09425 at 2000.046 kb on + strand, within RR42_RS09425 at 2000.046 kb on + strand, within RR42_RS09425 at 2000.047 kb on - strand, within RR42_RS09425 at 2000.047 kb on - strand, within RR42_RS09425 at 2000.112 kb on + strand, within RR42_RS09425 at 2000.112 kb on + strand, within RR42_RS09425 at 2000.112 kb on + strand, within RR42_RS09425 at 2000.112 kb on + strand, within RR42_RS09425 at 2000.112 kb on + strand, within RR42_RS09425 at 2000.113 kb on - strand, within RR42_RS09425 at 2000.323 kb on + strand, within RR42_RS09425 at 2000.324 kb on - strand, within RR42_RS09425
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,997,840 + RR42_RS09415 0.68 +0.3 1,997,840 + RR42_RS09415 0.68 -0.9 1,997,840 + RR42_RS09415 0.68 -0.1 1,997,840 + RR42_RS09415 0.68 +0.8 1,997,840 + RR42_RS09415 0.68 -0.4 1,997,840 + RR42_RS09415 0.68 -0.3 1,997,840 + RR42_RS09415 0.68 -1.9 1,997,840 + RR42_RS09415 0.68 +1.2 1,997,840 + RR42_RS09415 0.68 +0.3 1,997,841 - RR42_RS09415 0.68 +0.7 1,997,841 - RR42_RS09415 0.68 +1.2 1,997,841 - RR42_RS09415 0.68 +1.2 1,997,841 - RR42_RS09415 0.68 -0.8 1,998,119 + +0.3 1,998,119 + -0.6 1,998,150 - -0.2 1,998,424 - +0.4 1,998,424 - -1.2 1,998,553 + -1.0 1,998,553 + +0.3 1,998,553 + -0.0 1,998,554 - -0.5 1,998,554 - +0.1 1,998,554 - -0.6 1,998,554 - +1.2 1,998,554 - +0.3 1,998,564 + +0.4 1,998,564 + -0.5 1,998,565 - -0.1 1,998,565 - -1.0 1,999,140 + RR42_RS09420 0.51 +0.3 1,999,140 + RR42_RS09420 0.51 +0.3 1,999,140 + RR42_RS09420 0.51 -0.1 1,999,141 - RR42_RS09420 0.51 +0.8 1,999,279 + RR42_RS09420 0.71 +0.6 1,999,280 - RR42_RS09420 0.71 +0.6 1,999,482 + +0.4 1,999,583 + -0.1 1,999,583 + -0.5 1,999,627 + -0.8 1,999,848 + RR42_RS09425 0.23 -1.6 1,999,848 + RR42_RS09425 0.23 +0.4 1,999,849 - RR42_RS09425 0.23 +0.0 1,999,849 - RR42_RS09425 0.23 -0.3 1,999,935 + RR42_RS09425 0.29 -0.6 1,999,936 - RR42_RS09425 0.30 -0.9 1,999,936 - RR42_RS09425 0.30 +0.6 2,000,046 + RR42_RS09425 0.37 -0.5 2,000,046 + RR42_RS09425 0.37 +0.7 2,000,047 - RR42_RS09425 0.38 +1.5 2,000,047 - RR42_RS09425 0.38 +0.1 2,000,112 + RR42_RS09425 0.42 -0.3 2,000,112 + RR42_RS09425 0.42 +0.3 2,000,112 + RR42_RS09425 0.42 -0.7 2,000,112 + RR42_RS09425 0.42 -2.1 2,000,112 + RR42_RS09425 0.42 +0.6 2,000,113 - RR42_RS09425 0.42 +0.6 2,000,323 + RR42_RS09425 0.57 -0.5 2,000,324 - RR42_RS09425 0.57 -1.0
Or see this region's nucleotide sequence