Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09420

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09415 and RR42_RS09420 are separated by 542 nucleotidesRR42_RS09420 and RR42_RS09425 are separated by 41 nucleotides RR42_RS09415: RR42_RS09415 - allantoate amidohydrolase, at 1,996,990 to 1,998,243 _RS09415 RR42_RS09420: RR42_RS09420 - TetR family transcriptional regulator, at 1,998,786 to 1,999,484 _RS09420 RR42_RS09425: RR42_RS09425 - carotenoid oxygenase, at 1,999,526 to 2,000,914 _RS09425 Position (kb) 1998 1999 2000Strain fitness (log2 ratio) -2 -1 0 1at 1997.840 kb on + strand, within RR42_RS09415at 1997.840 kb on + strand, within RR42_RS09415at 1997.840 kb on + strand, within RR42_RS09415at 1997.840 kb on + strand, within RR42_RS09415at 1997.840 kb on + strand, within RR42_RS09415at 1997.840 kb on + strand, within RR42_RS09415at 1997.840 kb on + strand, within RR42_RS09415at 1997.840 kb on + strand, within RR42_RS09415at 1997.840 kb on + strand, within RR42_RS09415at 1997.841 kb on - strand, within RR42_RS09415at 1997.841 kb on - strand, within RR42_RS09415at 1997.841 kb on - strand, within RR42_RS09415at 1997.841 kb on - strand, within RR42_RS09415at 1998.119 kb on + strandat 1998.119 kb on + strandat 1998.150 kb on - strandat 1998.424 kb on - strandat 1998.424 kb on - strandat 1998.553 kb on + strandat 1998.553 kb on + strandat 1998.553 kb on + strandat 1998.554 kb on - strandat 1998.554 kb on - strandat 1998.554 kb on - strandat 1998.554 kb on - strandat 1998.554 kb on - strandat 1998.564 kb on + strandat 1998.564 kb on + strandat 1998.565 kb on - strandat 1998.565 kb on - strandat 1999.140 kb on + strand, within RR42_RS09420at 1999.140 kb on + strand, within RR42_RS09420at 1999.140 kb on + strand, within RR42_RS09420at 1999.141 kb on - strand, within RR42_RS09420at 1999.279 kb on + strand, within RR42_RS09420at 1999.280 kb on - strand, within RR42_RS09420at 1999.482 kb on + strandat 1999.583 kb on + strandat 1999.583 kb on + strandat 1999.627 kb on + strandat 1999.848 kb on + strand, within RR42_RS09425at 1999.848 kb on + strand, within RR42_RS09425at 1999.849 kb on - strand, within RR42_RS09425at 1999.849 kb on - strand, within RR42_RS09425at 1999.935 kb on + strand, within RR42_RS09425at 1999.936 kb on - strand, within RR42_RS09425at 1999.936 kb on - strand, within RR42_RS09425at 2000.046 kb on + strand, within RR42_RS09425at 2000.046 kb on + strand, within RR42_RS09425at 2000.047 kb on - strand, within RR42_RS09425at 2000.047 kb on - strand, within RR42_RS09425at 2000.112 kb on + strand, within RR42_RS09425at 2000.112 kb on + strand, within RR42_RS09425at 2000.112 kb on + strand, within RR42_RS09425at 2000.112 kb on + strand, within RR42_RS09425at 2000.112 kb on + strand, within RR42_RS09425at 2000.113 kb on - strand, within RR42_RS09425at 2000.323 kb on + strand, within RR42_RS09425at 2000.324 kb on - strand, within RR42_RS09425

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,997,840 + RR42_RS09415 0.68 +0.3
1,997,840 + RR42_RS09415 0.68 -0.9
1,997,840 + RR42_RS09415 0.68 -0.1
1,997,840 + RR42_RS09415 0.68 +0.8
1,997,840 + RR42_RS09415 0.68 -0.4
1,997,840 + RR42_RS09415 0.68 -0.3
1,997,840 + RR42_RS09415 0.68 -1.9
1,997,840 + RR42_RS09415 0.68 +1.2
1,997,840 + RR42_RS09415 0.68 +0.3
1,997,841 - RR42_RS09415 0.68 +0.7
1,997,841 - RR42_RS09415 0.68 +1.2
1,997,841 - RR42_RS09415 0.68 +1.2
1,997,841 - RR42_RS09415 0.68 -0.8
1,998,119 + +0.3
1,998,119 + -0.6
1,998,150 - -0.2
1,998,424 - +0.4
1,998,424 - -1.2
1,998,553 + -1.0
1,998,553 + +0.3
1,998,553 + -0.0
1,998,554 - -0.5
1,998,554 - +0.1
1,998,554 - -0.6
1,998,554 - +1.2
1,998,554 - +0.3
1,998,564 + +0.4
1,998,564 + -0.5
1,998,565 - -0.1
1,998,565 - -1.0
1,999,140 + RR42_RS09420 0.51 +0.3
1,999,140 + RR42_RS09420 0.51 +0.3
1,999,140 + RR42_RS09420 0.51 -0.1
1,999,141 - RR42_RS09420 0.51 +0.8
1,999,279 + RR42_RS09420 0.71 +0.6
1,999,280 - RR42_RS09420 0.71 +0.6
1,999,482 + +0.4
1,999,583 + -0.1
1,999,583 + -0.5
1,999,627 + -0.8
1,999,848 + RR42_RS09425 0.23 -1.6
1,999,848 + RR42_RS09425 0.23 +0.4
1,999,849 - RR42_RS09425 0.23 +0.0
1,999,849 - RR42_RS09425 0.23 -0.3
1,999,935 + RR42_RS09425 0.29 -0.6
1,999,936 - RR42_RS09425 0.30 -0.9
1,999,936 - RR42_RS09425 0.30 +0.6
2,000,046 + RR42_RS09425 0.37 -0.5
2,000,046 + RR42_RS09425 0.37 +0.7
2,000,047 - RR42_RS09425 0.38 +1.5
2,000,047 - RR42_RS09425 0.38 +0.1
2,000,112 + RR42_RS09425 0.42 -0.3
2,000,112 + RR42_RS09425 0.42 +0.3
2,000,112 + RR42_RS09425 0.42 -0.7
2,000,112 + RR42_RS09425 0.42 -2.1
2,000,112 + RR42_RS09425 0.42 +0.6
2,000,113 - RR42_RS09425 0.42 +0.6
2,000,323 + RR42_RS09425 0.57 -0.5
2,000,324 - RR42_RS09425 0.57 -1.0

Or see this region's nucleotide sequence