Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08810

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08800 and RR42_RS08805 are separated by 52 nucleotidesRR42_RS08805 and RR42_RS08810 are separated by 10 nucleotidesRR42_RS08810 and RR42_RS08815 are separated by 106 nucleotides RR42_RS08800: RR42_RS08800 - peptidylprolyl isomerase, at 1,843,569 to 1,844,315 _RS08800 RR42_RS08805: RR42_RS08805 - nitrate reductase, at 1,844,368 to 1,845,051 _RS08805 RR42_RS08810: RR42_RS08810 - nitrate reductase, at 1,845,062 to 1,845,766 _RS08810 RR42_RS08815: RR42_RS08815 - nitrate reductase, at 1,845,873 to 1,847,426 _RS08815 Position (kb) 1845 1846Strain fitness (log2 ratio) -1 0 1at 1844.250 kb on - strandat 1844.305 kb on - strandat 1844.520 kb on + strand, within RR42_RS08805at 1844.521 kb on - strand, within RR42_RS08805at 1844.522 kb on + strand, within RR42_RS08805at 1844.523 kb on - strand, within RR42_RS08805at 1845.011 kb on + strandat 1845.012 kb on - strandat 1845.012 kb on - strandat 1845.012 kb on - strandat 1845.012 kb on - strandat 1845.012 kb on - strandat 1845.017 kb on + strandat 1845.307 kb on - strand, within RR42_RS08810at 1845.441 kb on + strand, within RR42_RS08810at 1845.442 kb on - strand, within RR42_RS08810at 1845.487 kb on - strand, within RR42_RS08810at 1845.594 kb on + strand, within RR42_RS08810at 1845.594 kb on + strand, within RR42_RS08810at 1845.594 kb on + strand, within RR42_RS08810at 1845.595 kb on - strand, within RR42_RS08810at 1846.075 kb on + strand, within RR42_RS08815at 1846.076 kb on - strand, within RR42_RS08815at 1846.076 kb on - strand, within RR42_RS08815at 1846.099 kb on + strand, within RR42_RS08815at 1846.099 kb on + strand, within RR42_RS08815at 1846.100 kb on - strand, within RR42_RS08815at 1846.100 kb on - strand, within RR42_RS08815at 1846.264 kb on + strand, within RR42_RS08815at 1846.366 kb on + strand, within RR42_RS08815at 1846.366 kb on + strand, within RR42_RS08815at 1846.366 kb on + strand, within RR42_RS08815at 1846.367 kb on - strand, within RR42_RS08815at 1846.390 kb on + strand, within RR42_RS08815at 1846.439 kb on - strand, within RR42_RS08815at 1846.606 kb on + strand, within RR42_RS08815at 1846.606 kb on + strand, within RR42_RS08815at 1846.607 kb on - strand, within RR42_RS08815at 1846.730 kb on - strand, within RR42_RS08815at 1846.732 kb on + strand, within RR42_RS08815at 1846.732 kb on + strand, within RR42_RS08815at 1846.732 kb on + strand, within RR42_RS08815at 1846.732 kb on + strand, within RR42_RS08815at 1846.733 kb on - strand, within RR42_RS08815at 1846.745 kb on - strand, within RR42_RS08815at 1846.745 kb on - strand, within RR42_RS08815

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,844,250 - +1.5
1,844,305 - -0.3
1,844,520 + RR42_RS08805 0.22 -1.5
1,844,521 - RR42_RS08805 0.22 -0.7
1,844,522 + RR42_RS08805 0.23 +0.2
1,844,523 - RR42_RS08805 0.23 +0.5
1,845,011 + -0.4
1,845,012 - -1.5
1,845,012 - -0.6
1,845,012 - +0.3
1,845,012 - +0.1
1,845,012 - +0.3
1,845,017 + -0.9
1,845,307 - RR42_RS08810 0.35 +0.7
1,845,441 + RR42_RS08810 0.54 -0.0
1,845,442 - RR42_RS08810 0.54 -0.5
1,845,487 - RR42_RS08810 0.60 +0.2
1,845,594 + RR42_RS08810 0.75 +0.2
1,845,594 + RR42_RS08810 0.75 +0.4
1,845,594 + RR42_RS08810 0.75 +0.7
1,845,595 - RR42_RS08810 0.76 +0.5
1,846,075 + RR42_RS08815 0.13 -0.1
1,846,076 - RR42_RS08815 0.13 +0.2
1,846,076 - RR42_RS08815 0.13 -0.3
1,846,099 + RR42_RS08815 0.15 -0.8
1,846,099 + RR42_RS08815 0.15 -0.4
1,846,100 - RR42_RS08815 0.15 -0.3
1,846,100 - RR42_RS08815 0.15 -0.3
1,846,264 + RR42_RS08815 0.25 -0.1
1,846,366 + RR42_RS08815 0.32 +0.6
1,846,366 + RR42_RS08815 0.32 +1.1
1,846,366 + RR42_RS08815 0.32 +0.7
1,846,367 - RR42_RS08815 0.32 +0.1
1,846,390 + RR42_RS08815 0.33 -0.9
1,846,439 - RR42_RS08815 0.36 -1.5
1,846,606 + RR42_RS08815 0.47 -0.3
1,846,606 + RR42_RS08815 0.47 -1.0
1,846,607 - RR42_RS08815 0.47 +0.5
1,846,730 - RR42_RS08815 0.55 -0.2
1,846,732 + RR42_RS08815 0.55 -1.1
1,846,732 + RR42_RS08815 0.55 -0.3
1,846,732 + RR42_RS08815 0.55 -0.2
1,846,732 + RR42_RS08815 0.55 -0.7
1,846,733 - RR42_RS08815 0.55 -0.4
1,846,745 - RR42_RS08815 0.56 +1.2
1,846,745 - RR42_RS08815 0.56 +0.0

Or see this region's nucleotide sequence