Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08760

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08755 and RR42_RS08760 are separated by 29 nucleotidesRR42_RS08760 and RR42_RS08765 are separated by 55 nucleotides RR42_RS08755: RR42_RS08755 - molybdenum cofactor biosynthesis protein MoeA, at 1,834,084 to 1,835,208 _RS08755 RR42_RS08760: RR42_RS08760 - XRE family transcriptional regulator, at 1,835,238 to 1,835,903 _RS08760 RR42_RS08765: RR42_RS08765 - histidine kinase, at 1,835,959 to 1,837,890 _RS08765 Position (kb) 1835 1836Strain fitness (log2 ratio) -1 0 1at 1835.273 kb on - strandat 1835.600 kb on - strand, within RR42_RS08760at 1836.551 kb on - strand, within RR42_RS08765at 1836.841 kb on + strand, within RR42_RS08765

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,835,273 - -0.6
1,835,600 - RR42_RS08760 0.54 +1.3
1,836,551 - RR42_RS08765 0.31 +1.1
1,836,841 + RR42_RS08765 0.46 +0.3

Or see this region's nucleotide sequence