Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06670 and RR42_RS06675 are separated by 17 nucleotides RR42_RS06675 and RR42_RS06680 are separated by 60 nucleotides RR42_RS06680 and RR42_RS06685 are separated by 108 nucleotides RR42_RS06685 and RR42_RS06690 overlap by 4 nucleotides RR42_RS06690 and RR42_RS06695 overlap by 4 nucleotides
RR42_RS06670: RR42_RS06670 - hypothetical protein, at 1,453,215 to 1,453,568
_RS06670
RR42_RS06675: RR42_RS06675 - hypothetical protein, at 1,453,586 to 1,454,197
_RS06675
RR42_RS06680: RR42_RS06680 - hypothetical protein, at 1,454,258 to 1,454,866
_RS06680
RR42_RS06685: RR42_RS06685 - hypothetical protein, at 1,454,975 to 1,455,172
_RS06685
RR42_RS06690: RR42_RS06690 - hypothetical protein, at 1,455,169 to 1,455,624
_RS06690
RR42_RS06695: RR42_RS06695 - hypothetical protein, at 1,455,621 to 1,456,721
_RS06695
Position (kb) 1454
1455 Strain fitness (log2 ratio) -1
0
1
2 at 1453.284 kb on + strand, within RR42_RS06670 at 1453.490 kb on + strand, within RR42_RS06670 at 1453.490 kb on + strand, within RR42_RS06670 at 1453.528 kb on + strand, within RR42_RS06670 at 1453.528 kb on + strand, within RR42_RS06670 at 1453.541 kb on - strand at 1453.580 kb on - strand at 1453.583 kb on + strand at 1453.621 kb on - strand at 1453.752 kb on + strand, within RR42_RS06675 at 1453.752 kb on + strand, within RR42_RS06675 at 1453.785 kb on + strand, within RR42_RS06675 at 1454.019 kb on + strand, within RR42_RS06675 at 1454.019 kb on + strand, within RR42_RS06675 at 1454.042 kb on + strand, within RR42_RS06675 at 1454.043 kb on - strand, within RR42_RS06675 at 1454.043 kb on - strand, within RR42_RS06675 at 1454.043 kb on - strand, within RR42_RS06675 at 1454.100 kb on - strand, within RR42_RS06675 at 1454.218 kb on - strand at 1454.221 kb on + strand at 1454.222 kb on - strand at 1454.222 kb on - strand at 1454.392 kb on - strand, within RR42_RS06680 at 1454.467 kb on + strand, within RR42_RS06680 at 1454.469 kb on + strand, within RR42_RS06680 at 1454.469 kb on + strand, within RR42_RS06680 at 1454.469 kb on + strand, within RR42_RS06680 at 1454.469 kb on + strand, within RR42_RS06680 at 1454.475 kb on + strand, within RR42_RS06680 at 1454.553 kb on + strand, within RR42_RS06680 at 1454.586 kb on + strand, within RR42_RS06680 at 1454.587 kb on - strand, within RR42_RS06680 at 1454.750 kb on - strand, within RR42_RS06680 at 1454.776 kb on - strand, within RR42_RS06680 at 1454.930 kb on + strand at 1454.930 kb on + strand at 1454.931 kb on - strand at 1455.309 kb on + strand, within RR42_RS06690 at 1455.383 kb on + strand, within RR42_RS06690 at 1455.384 kb on - strand, within RR42_RS06690 at 1455.523 kb on + strand, within RR42_RS06690 at 1455.575 kb on + strand, within RR42_RS06690 at 1455.576 kb on - strand, within RR42_RS06690 at 1455.576 kb on - strand, within RR42_RS06690 at 1455.603 kb on - strand at 1455.603 kb on - strand at 1455.605 kb on + strand at 1455.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,453,284 + RR42_RS06670 0.19 +0.3 1,453,490 + RR42_RS06670 0.78 +0.2 1,453,490 + RR42_RS06670 0.78 +0.0 1,453,528 + RR42_RS06670 0.88 +0.0 1,453,528 + RR42_RS06670 0.88 -0.3 1,453,541 - -0.5 1,453,580 - -0.6 1,453,583 + -0.6 1,453,621 - -0.4 1,453,752 + RR42_RS06675 0.27 +0.1 1,453,752 + RR42_RS06675 0.27 +0.5 1,453,785 + RR42_RS06675 0.33 +0.5 1,454,019 + RR42_RS06675 0.71 +1.1 1,454,019 + RR42_RS06675 0.71 +0.4 1,454,042 + RR42_RS06675 0.75 +0.0 1,454,043 - RR42_RS06675 0.75 +0.8 1,454,043 - RR42_RS06675 0.75 +0.3 1,454,043 - RR42_RS06675 0.75 +0.3 1,454,100 - RR42_RS06675 0.84 -0.8 1,454,218 - +0.4 1,454,221 + +0.0 1,454,222 - -0.2 1,454,222 - +0.4 1,454,392 - RR42_RS06680 0.22 -0.2 1,454,467 + RR42_RS06680 0.34 +1.1 1,454,469 + RR42_RS06680 0.35 +1.3 1,454,469 + RR42_RS06680 0.35 -0.1 1,454,469 + RR42_RS06680 0.35 +0.7 1,454,469 + RR42_RS06680 0.35 +0.3 1,454,475 + RR42_RS06680 0.36 +1.0 1,454,553 + RR42_RS06680 0.48 +0.3 1,454,586 + RR42_RS06680 0.54 +0.7 1,454,587 - RR42_RS06680 0.54 -0.5 1,454,750 - RR42_RS06680 0.81 +1.9 1,454,776 - RR42_RS06680 0.85 +0.7 1,454,930 + -0.3 1,454,930 + -0.0 1,454,931 - -0.3 1,455,309 + RR42_RS06690 0.31 +0.4 1,455,383 + RR42_RS06690 0.47 +0.2 1,455,384 - RR42_RS06690 0.47 +0.3 1,455,523 + RR42_RS06690 0.78 +0.0 1,455,575 + RR42_RS06690 0.89 -0.9 1,455,576 - RR42_RS06690 0.89 -0.8 1,455,576 - RR42_RS06690 0.89 +1.4 1,455,603 - -0.8 1,455,603 - +0.4 1,455,605 + -0.3 1,455,655 - +0.4
Or see this region's nucleotide sequence