Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04105 and RR42_RS04110 are separated by 25 nucleotides RR42_RS04110 and RR42_RS04115 overlap by 4 nucleotides RR42_RS04115 and RR42_RS04120 are separated by 9 nucleotides
RR42_RS04105: RR42_RS04105 - pilus assembly protein CpaE, at 908,648 to 909,841
_RS04105
RR42_RS04110: RR42_RS04110 - pilus assembly protein TadG, at 909,867 to 910,325
_RS04110
RR42_RS04115: RR42_RS04115 - pilus assembly protein TadG, at 910,322 to 910,831
_RS04115
RR42_RS04120: RR42_RS04120 - pilus assembly protein TadG, at 910,841 to 912,121
_RS04120
Position (kb) 909
910
911 Strain fitness (log2 ratio) -2
-1
0
1
2 at 909.128 kb on + strand, within RR42_RS04105 at 909.128 kb on + strand, within RR42_RS04105 at 909.129 kb on - strand, within RR42_RS04105 at 909.310 kb on - strand, within RR42_RS04105 at 909.344 kb on + strand, within RR42_RS04105 at 909.646 kb on + strand, within RR42_RS04105 at 909.647 kb on - strand, within RR42_RS04105 at 909.868 kb on + strand at 909.868 kb on + strand at 909.869 kb on - strand at 909.990 kb on + strand, within RR42_RS04110 at 910.196 kb on - strand, within RR42_RS04110 at 910.325 kb on + strand at 910.328 kb on + strand at 910.329 kb on - strand at 910.329 kb on - strand at 910.401 kb on + strand, within RR42_RS04115 at 910.401 kb on + strand, within RR42_RS04115 at 910.402 kb on - strand, within RR42_RS04115 at 910.405 kb on + strand, within RR42_RS04115 at 910.405 kb on + strand, within RR42_RS04115 at 910.406 kb on - strand, within RR42_RS04115 at 910.406 kb on - strand, within RR42_RS04115 at 910.600 kb on - strand, within RR42_RS04115 at 910.863 kb on - strand at 910.863 kb on - strand at 911.172 kb on + strand, within RR42_RS04120 at 911.219 kb on - strand, within RR42_RS04120 at 911.219 kb on - strand, within RR42_RS04120
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 909,128 + RR42_RS04105 0.40 -0.5 909,128 + RR42_RS04105 0.40 +0.3 909,129 - RR42_RS04105 0.40 -0.7 909,310 - RR42_RS04105 0.55 -0.2 909,344 + RR42_RS04105 0.58 +0.9 909,646 + RR42_RS04105 0.84 +0.8 909,647 - RR42_RS04105 0.84 -0.1 909,868 + -1.1 909,868 + -1.5 909,869 - -0.6 909,990 + RR42_RS04110 0.27 -0.2 910,196 - RR42_RS04110 0.72 +1.4 910,325 + +1.3 910,328 + -0.1 910,329 - -0.8 910,329 - +0.7 910,401 + RR42_RS04115 0.15 +0.5 910,401 + RR42_RS04115 0.15 +0.1 910,402 - RR42_RS04115 0.16 -0.9 910,405 + RR42_RS04115 0.16 -0.4 910,405 + RR42_RS04115 0.16 -1.1 910,406 - RR42_RS04115 0.16 -0.7 910,406 - RR42_RS04115 0.16 -0.4 910,600 - RR42_RS04115 0.55 -0.6 910,863 - -0.9 910,863 - -0.2 911,172 + RR42_RS04120 0.26 +1.0 911,219 - RR42_RS04120 0.30 +1.9 911,219 - RR42_RS04120 0.30 -1.9
Or see this region's nucleotide sequence