Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03735 and RR42_RS03740 are separated by 89 nucleotides RR42_RS03740 and RR42_RS03745 are separated by 21 nucleotides RR42_RS03745 and RR42_RS03750 are separated by 298 nucleotides RR42_RS03750 and RR42_RS03755 overlap by 4 nucleotides
RR42_RS03735: RR42_RS03735 - hemagglutinin, at 823,811 to 825,478
_RS03735
RR42_RS03740: RR42_RS03740 - hypothetical protein, at 825,568 to 825,891
_RS03740
RR42_RS03745: RR42_RS03745 - LysR family transcriptional regulator, at 825,913 to 827,010
_RS03745
RR42_RS03750: RR42_RS03750 - formate dehydrogenase, at 827,309 to 827,824
_RS03750
RR42_RS03755: RR42_RS03755 - formate dehydrogenase, at 827,821 to 829,374
_RS03755
Position (kb) 825
826
827
828 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 824.945 kb on + strand, within RR42_RS03735 at 824.945 kb on + strand, within RR42_RS03735 at 824.945 kb on + strand, within RR42_RS03735 at 824.946 kb on - strand, within RR42_RS03735 at 824.946 kb on - strand, within RR42_RS03735 at 824.946 kb on - strand, within RR42_RS03735 at 825.013 kb on + strand, within RR42_RS03735 at 825.013 kb on + strand, within RR42_RS03735 at 825.014 kb on - strand, within RR42_RS03735 at 825.014 kb on - strand, within RR42_RS03735 at 825.053 kb on + strand, within RR42_RS03735 at 825.054 kb on - strand, within RR42_RS03735 at 825.054 kb on - strand, within RR42_RS03735 at 825.110 kb on + strand, within RR42_RS03735 at 825.110 kb on + strand, within RR42_RS03735 at 825.302 kb on - strand, within RR42_RS03735 at 825.474 kb on - strand at 825.485 kb on + strand at 825.979 kb on - strand at 825.986 kb on + strand at 825.987 kb on - strand at 826.187 kb on + strand, within RR42_RS03745 at 826.187 kb on + strand, within RR42_RS03745 at 826.188 kb on - strand, within RR42_RS03745 at 826.188 kb on - strand, within RR42_RS03745 at 826.188 kb on - strand, within RR42_RS03745 at 826.553 kb on + strand, within RR42_RS03745 at 826.553 kb on + strand, within RR42_RS03745 at 826.850 kb on + strand, within RR42_RS03745 at 826.909 kb on - strand at 827.052 kb on - strand at 827.053 kb on + strand at 827.053 kb on + strand at 827.054 kb on - strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.082 kb on + strand at 827.433 kb on + strand, within RR42_RS03750 at 827.433 kb on + strand, within RR42_RS03750 at 827.433 kb on + strand, within RR42_RS03750 at 827.433 kb on + strand, within RR42_RS03750 at 827.434 kb on - strand, within RR42_RS03750 at 827.434 kb on - strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.565 kb on + strand, within RR42_RS03750 at 827.687 kb on + strand, within RR42_RS03750 at 827.688 kb on - strand, within RR42_RS03750 at 827.688 kb on - strand, within RR42_RS03750
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 824,945 + RR42_RS03735 0.68 -0.1 824,945 + RR42_RS03735 0.68 +0.9 824,945 + RR42_RS03735 0.68 -0.1 824,946 - RR42_RS03735 0.68 +1.5 824,946 - RR42_RS03735 0.68 -0.8 824,946 - RR42_RS03735 0.68 -0.3 825,013 + RR42_RS03735 0.72 +0.1 825,013 + RR42_RS03735 0.72 +0.1 825,014 - RR42_RS03735 0.72 +0.1 825,014 - RR42_RS03735 0.72 +0.6 825,053 + RR42_RS03735 0.74 -0.7 825,054 - RR42_RS03735 0.75 -0.1 825,054 - RR42_RS03735 0.75 -0.1 825,110 + RR42_RS03735 0.78 -1.9 825,110 + RR42_RS03735 0.78 +1.0 825,302 - RR42_RS03735 0.89 +0.0 825,474 - -0.1 825,485 + -0.1 825,979 - +0.2 825,986 + +0.3 825,987 - -1.3 826,187 + RR42_RS03745 0.25 +0.0 826,187 + RR42_RS03745 0.25 +1.0 826,188 - RR42_RS03745 0.25 -0.2 826,188 - RR42_RS03745 0.25 -0.1 826,188 - RR42_RS03745 0.25 -0.7 826,553 + RR42_RS03745 0.58 +0.7 826,553 + RR42_RS03745 0.58 -1.3 826,850 + RR42_RS03745 0.85 -1.0 826,909 - -0.3 827,052 - -0.5 827,053 + -0.7 827,053 + +1.8 827,054 - +0.9 827,072 + -0.8 827,072 + -0.0 827,072 + -0.2 827,072 + +0.2 827,072 + +0.6 827,072 + +0.7 827,072 + +0.3 827,072 + +0.2 827,072 + -1.2 827,072 + -0.5 827,073 - +0.5 827,073 - +0.6 827,073 - -0.6 827,073 - -1.4 827,073 - -0.0 827,073 - -0.3 827,073 - +0.2 827,073 - +0.1 827,073 - +0.2 827,073 - +0.4 827,082 + -0.3 827,433 + RR42_RS03750 0.24 +0.5 827,433 + RR42_RS03750 0.24 +0.2 827,433 + RR42_RS03750 0.24 +0.4 827,433 + RR42_RS03750 0.24 +0.0 827,434 - RR42_RS03750 0.24 +0.7 827,434 - RR42_RS03750 0.24 +0.2 827,438 + RR42_RS03750 0.25 +0.6 827,438 + RR42_RS03750 0.25 -0.8 827,438 + RR42_RS03750 0.25 -0.3 827,438 + RR42_RS03750 0.25 -0.5 827,438 + RR42_RS03750 0.25 -0.2 827,438 + RR42_RS03750 0.25 +0.8 827,438 + RR42_RS03750 0.25 -0.4 827,439 - RR42_RS03750 0.25 -0.3 827,439 - RR42_RS03750 0.25 -0.1 827,439 - RR42_RS03750 0.25 +0.9 827,439 - RR42_RS03750 0.25 -0.5 827,519 + RR42_RS03750 0.41 +1.4 827,519 + RR42_RS03750 0.41 +0.8 827,519 + RR42_RS03750 0.41 +0.0 827,519 + RR42_RS03750 0.41 -0.2 827,519 + RR42_RS03750 0.41 +2.9 827,519 + RR42_RS03750 0.41 -0.6 827,519 + RR42_RS03750 0.41 +0.2 827,519 + RR42_RS03750 0.41 +0.3 827,519 + RR42_RS03750 0.41 -0.2 827,565 + RR42_RS03750 0.50 -0.8 827,687 + RR42_RS03750 0.73 -0.2 827,688 - RR42_RS03750 0.73 +0.6 827,688 - RR42_RS03750 0.73 -0.5
Or see this region's nucleotide sequence