Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03610 and RR42_RS03615 are separated by 118 nucleotides RR42_RS03615 and RR42_RS03620 are separated by 39 nucleotides RR42_RS03620 and RR42_RS03625 are separated by 193 nucleotides RR42_RS03625 and RR42_RS03630 are separated by 335 nucleotides
RR42_RS03610: RR42_RS03610 - alpha/beta hydrolase, at 805,852 to 806,886
_RS03610
RR42_RS03615: RR42_RS03615 - hypothetical protein, at 807,005 to 807,199
_RS03615
RR42_RS03620: RR42_RS03620 - lipid A biosynthesis lauroyl acyltransferase, at 807,239 to 808,117
_RS03620
RR42_RS03625: RR42_RS03625 - hypothetical protein, at 808,311 to 808,550
_RS03625
RR42_RS03630: RR42_RS03630 - cold-shock protein, at 808,886 to 809,089
_RS03630
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1 at 806.429 kb on - strand, within RR42_RS03610 at 806.429 kb on - strand, within RR42_RS03610 at 806.429 kb on - strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.488 kb on + strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.593 kb on + strand, within RR42_RS03610 at 806.593 kb on + strand, within RR42_RS03610 at 806.594 kb on - strand, within RR42_RS03610 at 806.594 kb on - strand, within RR42_RS03610 at 806.595 kb on - strand, within RR42_RS03610 at 806.884 kb on + strand at 806.885 kb on - strand at 806.932 kb on + strand at 806.933 kb on - strand at 807.018 kb on + strand at 807.018 kb on + strand at 807.066 kb on + strand, within RR42_RS03615 at 807.066 kb on + strand, within RR42_RS03615 at 807.066 kb on + strand, within RR42_RS03615 at 807.067 kb on - strand, within RR42_RS03615 at 807.067 kb on - strand, within RR42_RS03615 at 807.188 kb on + strand at 807.244 kb on - strand at 807.297 kb on + strand at 807.298 kb on - strand at 807.733 kb on - strand, within RR42_RS03620 at 807.861 kb on + strand, within RR42_RS03620 at 807.862 kb on - strand, within RR42_RS03620 at 807.862 kb on - strand, within RR42_RS03620 at 808.009 kb on - strand, within RR42_RS03620 at 808.051 kb on + strand at 808.052 kb on - strand at 808.052 kb on - strand at 808.052 kb on - strand at 808.052 kb on - strand at 808.053 kb on + strand at 808.053 kb on + strand at 808.278 kb on - strand at 808.387 kb on + strand, within RR42_RS03625 at 808.388 kb on - strand, within RR42_RS03625 at 808.482 kb on + strand, within RR42_RS03625 at 808.482 kb on + strand, within RR42_RS03625 at 808.483 kb on - strand, within RR42_RS03625 at 808.483 kb on - strand, within RR42_RS03625 at 808.483 kb on - strand, within RR42_RS03625 at 808.582 kb on + strand at 808.583 kb on - strand at 808.599 kb on + strand at 808.599 kb on + strand at 808.601 kb on + strand at 808.620 kb on + strand at 808.620 kb on + strand at 808.620 kb on + strand at 808.620 kb on + strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.716 kb on + strand at 808.730 kb on - strand at 808.865 kb on - strand at 808.871 kb on + strand at 808.872 kb on - strand at 808.872 kb on - strand at 809.033 kb on + strand, within RR42_RS03630 at 809.087 kb on + strand at 809.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 806,429 - RR42_RS03610 0.56 -0.1 806,429 - RR42_RS03610 0.56 +0.2 806,429 - RR42_RS03610 0.56 -0.4 806,485 + RR42_RS03610 0.61 -0.9 806,485 + RR42_RS03610 0.61 -0.4 806,485 + RR42_RS03610 0.61 +0.4 806,485 + RR42_RS03610 0.61 +0.9 806,485 + RR42_RS03610 0.61 -0.5 806,485 + RR42_RS03610 0.61 -0.4 806,486 - RR42_RS03610 0.61 -0.4 806,486 - RR42_RS03610 0.61 -0.6 806,486 - RR42_RS03610 0.61 +0.4 806,486 - RR42_RS03610 0.61 -0.9 806,486 - RR42_RS03610 0.61 +0.4 806,488 + RR42_RS03610 0.61 +0.4 806,489 - RR42_RS03610 0.62 -0.2 806,489 - RR42_RS03610 0.62 -1.2 806,489 - RR42_RS03610 0.62 +0.0 806,489 - RR42_RS03610 0.62 -0.1 806,489 - RR42_RS03610 0.62 -0.4 806,489 - RR42_RS03610 0.62 +0.5 806,593 + RR42_RS03610 0.72 +0.7 806,593 + RR42_RS03610 0.72 -0.2 806,594 - RR42_RS03610 0.72 -2.2 806,594 - RR42_RS03610 0.72 +1.6 806,595 - RR42_RS03610 0.72 +0.2 806,884 + +0.4 806,885 - +0.9 806,932 + +0.1 806,933 - -0.1 807,018 + +0.1 807,018 + +0.7 807,066 + RR42_RS03615 0.31 -1.2 807,066 + RR42_RS03615 0.31 -0.2 807,066 + RR42_RS03615 0.31 -0.6 807,067 - RR42_RS03615 0.32 -0.8 807,067 - RR42_RS03615 0.32 +0.5 807,188 + -0.4 807,244 - -0.1 807,297 + -0.3 807,298 - -0.3 807,733 - RR42_RS03620 0.56 +1.3 807,861 + RR42_RS03620 0.71 -1.8 807,862 - RR42_RS03620 0.71 +1.7 807,862 - RR42_RS03620 0.71 +0.5 808,009 - RR42_RS03620 0.88 +1.2 808,051 + +0.9 808,052 - +1.1 808,052 - +0.1 808,052 - +0.8 808,052 - -2.1 808,053 + -1.0 808,053 + +1.0 808,278 - -0.3 808,387 + RR42_RS03625 0.32 -0.3 808,388 - RR42_RS03625 0.32 -0.6 808,482 + RR42_RS03625 0.71 +0.9 808,482 + RR42_RS03625 0.71 +0.0 808,483 - RR42_RS03625 0.72 +0.1 808,483 - RR42_RS03625 0.72 -2.0 808,483 - RR42_RS03625 0.72 +0.3 808,582 + -0.7 808,583 - -0.2 808,599 + -0.9 808,599 + -0.9 808,601 + -0.1 808,620 + -0.3 808,620 + -0.2 808,620 + -1.1 808,620 + -0.1 808,621 - +0.2 808,621 - +0.2 808,621 - +0.7 808,621 - +0.7 808,716 + -1.2 808,730 - +0.3 808,865 - -0.1 808,871 + -0.3 808,872 - -0.1 808,872 - +0.4 809,033 + RR42_RS03630 0.72 -0.2 809,087 + +0.1 809,111 - +0.9
Or see this region's nucleotide sequence