Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02145 and RR42_RS02150 are separated by 393 nucleotides RR42_RS02150 and RR42_RS02155 are separated by 197 nucleotides RR42_RS02155 and RR42_RS02160 are separated by 128 nucleotides
RR42_RS02145: RR42_RS02145 - excinuclease ABC subunit A, at 474,837 to 477,701
_RS02145
RR42_RS02150: RR42_RS02150 - membrane protein, at 478,095 to 479,351
_RS02150
RR42_RS02155: RR42_RS02155 - single-stranded DNA-binding protein, at 479,549 to 480,103
_RS02155
RR42_RS02160: RR42_RS02160 - LacI family transcriptional regulator, at 480,232 to 481,215
_RS02160
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 477.121 kb on + strand, within RR42_RS02145 at 477.121 kb on + strand, within RR42_RS02145 at 477.121 kb on + strand, within RR42_RS02145 at 477.346 kb on + strand, within RR42_RS02145 at 477.382 kb on + strand, within RR42_RS02145 at 477.383 kb on - strand, within RR42_RS02145 at 477.524 kb on - strand at 477.545 kb on - strand at 477.545 kb on - strand at 477.701 kb on + strand at 477.701 kb on + strand at 477.701 kb on + strand at 477.701 kb on + strand at 477.701 kb on + strand at 477.702 kb on - strand at 477.702 kb on - strand at 477.702 kb on - strand at 477.702 kb on - strand at 477.703 kb on + strand at 477.703 kb on + strand at 477.703 kb on + strand at 477.703 kb on + strand at 477.704 kb on - strand at 477.704 kb on - strand at 477.901 kb on + strand at 477.902 kb on - strand at 477.902 kb on - strand at 477.904 kb on + strand at 477.904 kb on + strand at 477.905 kb on - strand at 477.942 kb on + strand at 478.109 kb on + strand at 478.109 kb on + strand at 478.109 kb on + strand at 478.109 kb on + strand at 478.109 kb on + strand at 478.109 kb on + strand at 478.110 kb on - strand at 478.110 kb on - strand at 478.903 kb on - strand, within RR42_RS02150 at 478.903 kb on - strand, within RR42_RS02150 at 479.167 kb on - strand, within RR42_RS02150 at 479.167 kb on - strand, within RR42_RS02150 at 479.285 kb on + strand at 479.285 kb on + strand at 479.287 kb on + strand at 479.417 kb on + strand at 479.421 kb on + strand at 479.421 kb on + strand at 479.468 kb on + strand at 480.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 477,121 + RR42_RS02145 0.80 +0.3 477,121 + RR42_RS02145 0.80 -0.3 477,121 + RR42_RS02145 0.80 +0.2 477,346 + RR42_RS02145 0.88 +0.1 477,382 + RR42_RS02145 0.89 -0.5 477,383 - RR42_RS02145 0.89 -0.0 477,524 - +0.3 477,545 - +0.2 477,545 - +0.6 477,701 + -2.8 477,701 + -1.4 477,701 + -1.0 477,701 + +0.6 477,701 + +0.5 477,702 - +0.2 477,702 - -0.0 477,702 - +0.5 477,702 - +0.7 477,703 + +0.3 477,703 + +0.3 477,703 + +0.1 477,703 + +0.1 477,704 - +0.2 477,704 - -1.8 477,901 + -0.9 477,902 - +1.5 477,902 - -0.5 477,904 + -0.5 477,904 + -0.1 477,905 - +0.3 477,942 + +0.7 478,109 + -1.9 478,109 + +1.1 478,109 + -0.5 478,109 + +1.7 478,109 + +0.6 478,109 + -0.6 478,110 - -1.4 478,110 - -0.8 478,903 - RR42_RS02150 0.64 -0.5 478,903 - RR42_RS02150 0.64 -2.0 479,167 - RR42_RS02150 0.85 -0.7 479,167 - RR42_RS02150 0.85 +0.3 479,285 + +0.4 479,285 + -0.5 479,287 + +0.1 479,417 + -0.3 479,421 + -0.2 479,421 + +0.1 479,468 + -0.1 480,321 + -1.1
Or see this region's nucleotide sequence