Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01940 and RR42_RS01945 are separated by 125 nucleotides RR42_RS01945 and RR42_RS01950 are separated by 18 nucleotides
RR42_RS01940: RR42_RS01940 - glycosyl transferase, at 434,726 to 435,754
_RS01940
RR42_RS01945: RR42_RS01945 - nitrate ABC transporter ATP-binding protein, at 435,880 to 436,683
_RS01945
RR42_RS01950: RR42_RS01950 - nitrate ABC transporter permease, at 436,702 to 437,640
_RS01950
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2 at 434.985 kb on - strand, within RR42_RS01940 at 434.985 kb on - strand, within RR42_RS01940 at 435.039 kb on + strand, within RR42_RS01940 at 435.075 kb on + strand, within RR42_RS01940 at 435.075 kb on + strand, within RR42_RS01940 at 435.075 kb on + strand, within RR42_RS01940 at 435.075 kb on + strand, within RR42_RS01940 at 435.075 kb on + strand, within RR42_RS01940 at 435.075 kb on + strand, within RR42_RS01940 at 435.075 kb on + strand, within RR42_RS01940 at 435.076 kb on - strand, within RR42_RS01940 at 435.076 kb on - strand, within RR42_RS01940 at 435.076 kb on - strand, within RR42_RS01940 at 435.076 kb on - strand, within RR42_RS01940 at 435.076 kb on - strand, within RR42_RS01940 at 435.076 kb on - strand, within RR42_RS01940 at 435.076 kb on - strand, within RR42_RS01940 at 435.079 kb on + strand, within RR42_RS01940 at 435.079 kb on + strand, within RR42_RS01940 at 435.079 kb on + strand, within RR42_RS01940 at 435.079 kb on + strand, within RR42_RS01940 at 435.080 kb on - strand, within RR42_RS01940 at 435.080 kb on - strand, within RR42_RS01940 at 435.081 kb on + strand, within RR42_RS01940 at 435.081 kb on + strand, within RR42_RS01940 at 435.081 kb on + strand, within RR42_RS01940 at 435.142 kb on + strand, within RR42_RS01940 at 435.142 kb on + strand, within RR42_RS01940 at 435.143 kb on - strand, within RR42_RS01940 at 435.143 kb on - strand, within RR42_RS01940 at 435.441 kb on + strand, within RR42_RS01940 at 435.441 kb on + strand, within RR42_RS01940 at 435.442 kb on - strand, within RR42_RS01940 at 435.442 kb on - strand, within RR42_RS01940 at 435.555 kb on + strand, within RR42_RS01940 at 435.556 kb on - strand, within RR42_RS01940 at 435.556 kb on - strand, within RR42_RS01940 at 435.556 kb on - strand, within RR42_RS01940 at 435.556 kb on - strand, within RR42_RS01940 at 435.556 kb on - strand, within RR42_RS01940 at 435.684 kb on + strand at 435.684 kb on + strand at 435.684 kb on + strand at 435.685 kb on - strand at 435.956 kb on + strand at 435.957 kb on - strand at 436.280 kb on + strand, within RR42_RS01945 at 436.280 kb on + strand, within RR42_RS01945 at 436.388 kb on + strand, within RR42_RS01945 at 436.388 kb on + strand, within RR42_RS01945 at 436.389 kb on - strand, within RR42_RS01945 at 436.389 kb on - strand, within RR42_RS01945 at 436.389 kb on - strand, within RR42_RS01945 at 436.572 kb on + strand, within RR42_RS01945 at 436.573 kb on - strand, within RR42_RS01945 at 436.703 kb on + strand at 436.703 kb on + strand at 436.703 kb on + strand at 436.703 kb on + strand at 436.704 kb on - strand at 436.704 kb on - strand at 436.704 kb on - strand at 436.704 kb on - strand at 436.704 kb on - strand at 436.893 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.957 kb on - strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.004 kb on - strand, within RR42_RS01950 at 437.004 kb on - strand, within RR42_RS01950 at 437.073 kb on + strand, within RR42_RS01950 at 437.074 kb on - strand, within RR42_RS01950 at 437.319 kb on - strand, within RR42_RS01950 at 437.434 kb on + strand, within RR42_RS01950
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 434,985 - RR42_RS01940 0.25 -1.1 434,985 - RR42_RS01940 0.25 -2.0 435,039 + RR42_RS01940 0.30 +0.6 435,075 + RR42_RS01940 0.34 -0.7 435,075 + RR42_RS01940 0.34 -1.0 435,075 + RR42_RS01940 0.34 -0.7 435,075 + RR42_RS01940 0.34 -0.7 435,075 + RR42_RS01940 0.34 -0.4 435,075 + RR42_RS01940 0.34 -0.9 435,075 + RR42_RS01940 0.34 +0.3 435,076 - RR42_RS01940 0.34 -1.0 435,076 - RR42_RS01940 0.34 -1.0 435,076 - RR42_RS01940 0.34 -0.2 435,076 - RR42_RS01940 0.34 -2.5 435,076 - RR42_RS01940 0.34 +1.8 435,076 - RR42_RS01940 0.34 -1.2 435,076 - RR42_RS01940 0.34 -1.5 435,079 + RR42_RS01940 0.34 -0.4 435,079 + RR42_RS01940 0.34 -0.7 435,079 + RR42_RS01940 0.34 -0.9 435,079 + RR42_RS01940 0.34 -1.3 435,080 - RR42_RS01940 0.34 -1.5 435,080 - RR42_RS01940 0.34 -1.0 435,081 + RR42_RS01940 0.34 -0.9 435,081 + RR42_RS01940 0.34 -0.5 435,081 + RR42_RS01940 0.34 -2.6 435,142 + RR42_RS01940 0.40 -0.9 435,142 + RR42_RS01940 0.40 +1.1 435,143 - RR42_RS01940 0.41 -0.3 435,143 - RR42_RS01940 0.41 -1.2 435,441 + RR42_RS01940 0.69 +1.6 435,441 + RR42_RS01940 0.69 -2.6 435,442 - RR42_RS01940 0.70 -1.1 435,442 - RR42_RS01940 0.70 -0.2 435,555 + RR42_RS01940 0.81 -0.7 435,556 - RR42_RS01940 0.81 -0.9 435,556 - RR42_RS01940 0.81 -0.6 435,556 - RR42_RS01940 0.81 -0.5 435,556 - RR42_RS01940 0.81 -1.1 435,556 - RR42_RS01940 0.81 +1.8 435,684 + -1.7 435,684 + -0.6 435,684 + -1.4 435,685 - -0.8 435,956 + -0.5 435,957 - -0.1 436,280 + RR42_RS01945 0.50 -0.4 436,280 + RR42_RS01945 0.50 +1.2 436,388 + RR42_RS01945 0.63 +0.2 436,388 + RR42_RS01945 0.63 +0.0 436,389 - RR42_RS01945 0.63 -0.5 436,389 - RR42_RS01945 0.63 +0.2 436,389 - RR42_RS01945 0.63 -1.3 436,572 + RR42_RS01945 0.86 -0.9 436,573 - RR42_RS01945 0.86 -1.3 436,703 + -1.1 436,703 + -1.9 436,703 + -0.8 436,703 + +0.6 436,704 - -2.1 436,704 - -1.6 436,704 - -0.9 436,704 - +0.1 436,704 - +0.5 436,893 + RR42_RS01950 0.20 +0.2 436,925 + RR42_RS01950 0.24 -0.9 436,925 + RR42_RS01950 0.24 +0.2 436,925 + RR42_RS01950 0.24 +0.4 436,925 + RR42_RS01950 0.24 +0.3 436,925 + RR42_RS01950 0.24 -0.8 436,926 - RR42_RS01950 0.24 +0.8 436,926 - RR42_RS01950 0.24 +0.2 436,926 - RR42_RS01950 0.24 -2.1 436,926 - RR42_RS01950 0.24 -0.0 436,926 - RR42_RS01950 0.24 +0.3 436,926 - RR42_RS01950 0.24 -0.8 436,957 - RR42_RS01950 0.27 +0.2 437,003 + RR42_RS01950 0.32 -0.2 437,003 + RR42_RS01950 0.32 +0.5 437,003 + RR42_RS01950 0.32 -0.3 437,003 + RR42_RS01950 0.32 -0.3 437,003 + RR42_RS01950 0.32 -0.1 437,004 - RR42_RS01950 0.32 +0.6 437,004 - RR42_RS01950 0.32 -0.6 437,073 + RR42_RS01950 0.40 -0.5 437,074 - RR42_RS01950 0.40 -0.1 437,319 - RR42_RS01950 0.66 -0.1 437,434 + RR42_RS01950 0.78 +0.3
Or see this region's nucleotide sequence