Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01835 and RR42_RS01840 are separated by 164 nucleotides RR42_RS01840 and RR42_RS01845 are separated by 117 nucleotides RR42_RS01845 and RR42_RS01850 are separated by 7 nucleotides
RR42_RS01835: RR42_RS01835 - glutaredoxin, at 416,293 to 416,550
_RS01835
RR42_RS01840: RR42_RS01840 - preprotein translocase subunit SecB, at 416,715 to 417,233
_RS01840
RR42_RS01845: RR42_RS01845 - glycerol-3-phosphate dehydrogenase, at 417,351 to 418,367
_RS01845
RR42_RS01850: RR42_RS01850 - ABC transporter substrate-binding protein, at 418,375 to 419,367
_RS01850
Position (kb) 417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 416.464 kb on + strand, within RR42_RS01835 at 416.464 kb on + strand, within RR42_RS01835 at 416.596 kb on + strand at 416.596 kb on + strand at 416.596 kb on + strand at 416.597 kb on - strand at 416.597 kb on - strand at 416.597 kb on - strand at 416.597 kb on - strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.601 kb on + strand at 416.603 kb on + strand at 417.316 kb on - strand at 417.762 kb on + strand, within RR42_RS01845 at 417.762 kb on + strand, within RR42_RS01845 at 418.288 kb on + strand at 418.655 kb on - strand, within RR42_RS01850 at 418.656 kb on + strand, within RR42_RS01850 at 418.656 kb on + strand, within RR42_RS01850 at 418.656 kb on + strand, within RR42_RS01850 at 418.656 kb on + strand, within RR42_RS01850 at 418.656 kb on + strand, within RR42_RS01850 at 418.656 kb on + strand, within RR42_RS01850 at 418.657 kb on - strand, within RR42_RS01850 at 418.657 kb on - strand, within RR42_RS01850 at 418.657 kb on - strand, within RR42_RS01850 at 418.657 kb on - strand, within RR42_RS01850 at 418.657 kb on - strand, within RR42_RS01850 at 418.657 kb on - strand, within RR42_RS01850 at 418.657 kb on - strand, within RR42_RS01850 at 418.657 kb on - strand, within RR42_RS01850 at 418.859 kb on - strand, within RR42_RS01850 at 418.859 kb on - strand, within RR42_RS01850 at 418.859 kb on - strand, within RR42_RS01850 at 418.859 kb on - strand, within RR42_RS01850 at 419.260 kb on + strand, within RR42_RS01850 at 419.260 kb on + strand, within RR42_RS01850 at 419.261 kb on - strand, within RR42_RS01850 at 419.261 kb on - strand, within RR42_RS01850 at 419.261 kb on - strand, within RR42_RS01850 at 419.366 kb on - strand at 419.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 416,464 + RR42_RS01835 0.66 +0.8 416,464 + RR42_RS01835 0.66 +0.1 416,596 + -0.6 416,596 + +0.3 416,596 + -0.0 416,597 - +0.1 416,597 - +0.4 416,597 - +0.4 416,597 - +0.3 416,601 + +0.4 416,601 + -0.7 416,601 + +0.8 416,601 + +0.5 416,601 + +0.1 416,601 + -0.3 416,601 + +0.9 416,603 + +1.1 417,316 - -2.4 417,762 + RR42_RS01845 0.40 -3.0 417,762 + RR42_RS01845 0.40 -3.7 418,288 + -1.5 418,655 - RR42_RS01850 0.28 +0.1 418,656 + RR42_RS01850 0.28 +0.3 418,656 + RR42_RS01850 0.28 +0.7 418,656 + RR42_RS01850 0.28 -0.5 418,656 + RR42_RS01850 0.28 +1.1 418,656 + RR42_RS01850 0.28 -1.0 418,656 + RR42_RS01850 0.28 +1.1 418,657 - RR42_RS01850 0.28 -0.1 418,657 - RR42_RS01850 0.28 +1.3 418,657 - RR42_RS01850 0.28 -1.3 418,657 - RR42_RS01850 0.28 +0.2 418,657 - RR42_RS01850 0.28 -1.0 418,657 - RR42_RS01850 0.28 -0.2 418,657 - RR42_RS01850 0.28 -0.8 418,657 - RR42_RS01850 0.28 -0.5 418,859 - RR42_RS01850 0.49 +0.5 418,859 - RR42_RS01850 0.49 +0.3 418,859 - RR42_RS01850 0.49 -0.1 418,859 - RR42_RS01850 0.49 -0.1 419,260 + RR42_RS01850 0.89 -0.0 419,260 + RR42_RS01850 0.89 -1.1 419,261 - RR42_RS01850 0.89 -0.4 419,261 - RR42_RS01850 0.89 +0.4 419,261 - RR42_RS01850 0.89 +0.3 419,366 - +0.1 419,366 - +1.3
Or see this region's nucleotide sequence