Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01030 and RR42_RS01035 overlap by 2 nucleotides RR42_RS01035 and RR42_RS01040 are separated by 282 nucleotides RR42_RS01040 and RR42_RS01045 are separated by 101 nucleotides RR42_RS01045 and RR42_RS01050 are separated by 147 nucleotides
RR42_RS01030: RR42_RS01030 - molecular chaperone DnaK, at 244,320 to 244,739
_RS01030
RR42_RS01035: RR42_RS01035 - hypothetical protein, at 244,738 to 245,046
_RS01035
RR42_RS01040: RR42_RS01040 - cobalamin biosynthesis protein CobW, at 245,329 to 246,417
_RS01040
RR42_RS01045: RR42_RS01045 - Fur family transcriptional regulator, at 246,519 to 247,040
_RS01045
RR42_RS01050: RR42_RS01050 - alpha/beta hydrolase, at 247,188 to 248,087
_RS01050
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 245.187 kb on - strand at 245.187 kb on - strand at 245.212 kb on - strand at 245.212 kb on - strand at 245.212 kb on - strand at 245.216 kb on + strand at 245.216 kb on + strand at 245.216 kb on + strand at 245.217 kb on - strand at 245.217 kb on - strand at 245.240 kb on - strand at 245.240 kb on - strand at 245.270 kb on - strand at 245.270 kb on - strand at 245.496 kb on + strand, within RR42_RS01040 at 245.496 kb on + strand, within RR42_RS01040 at 245.496 kb on + strand, within RR42_RS01040 at 245.497 kb on - strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.499 kb on - strand, within RR42_RS01040 at 245.499 kb on - strand, within RR42_RS01040 at 245.499 kb on - strand, within RR42_RS01040 at 245.499 kb on - strand, within RR42_RS01040 at 245.503 kb on + strand, within RR42_RS01040 at 245.503 kb on + strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.513 kb on + strand, within RR42_RS01040 at 245.534 kb on + strand, within RR42_RS01040 at 245.534 kb on + strand, within RR42_RS01040 at 246.310 kb on + strand at 246.311 kb on - strand at 246.345 kb on + strand at 246.346 kb on - strand at 246.346 kb on - strand at 246.464 kb on + strand at 246.520 kb on + strand at 246.521 kb on - strand at 246.811 kb on + strand, within RR42_RS01045 at 246.812 kb on - strand, within RR42_RS01045 at 247.050 kb on + strand at 247.050 kb on + strand at 247.051 kb on - strand at 247.051 kb on - strand at 247.056 kb on + strand at 247.057 kb on - strand at 247.147 kb on + strand at 247.147 kb on + strand at 247.147 kb on + strand at 247.147 kb on + strand at 247.148 kb on - strand at 247.148 kb on - strand at 247.188 kb on - strand at 247.188 kb on - strand at 247.244 kb on + strand at 247.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 245,187 - -1.3 245,187 - +0.6 245,212 - +0.4 245,212 - +0.3 245,212 - -0.4 245,216 + -0.2 245,216 + -2.1 245,216 + -1.6 245,217 - +0.3 245,217 - -0.1 245,240 - +0.1 245,240 - -0.6 245,270 - -0.4 245,270 - +0.0 245,496 + RR42_RS01040 0.15 -1.3 245,496 + RR42_RS01040 0.15 +0.1 245,496 + RR42_RS01040 0.15 -0.1 245,497 - RR42_RS01040 0.15 +0.2 245,498 + RR42_RS01040 0.16 +0.4 245,498 + RR42_RS01040 0.16 +0.2 245,498 + RR42_RS01040 0.16 +0.3 245,498 + RR42_RS01040 0.16 -0.0 245,498 + RR42_RS01040 0.16 -1.3 245,498 + RR42_RS01040 0.16 -0.8 245,498 + RR42_RS01040 0.16 +0.3 245,498 + RR42_RS01040 0.16 -1.2 245,498 + RR42_RS01040 0.16 +1.1 245,498 + RR42_RS01040 0.16 +0.6 245,498 + RR42_RS01040 0.16 +0.6 245,498 + RR42_RS01040 0.16 +2.1 245,498 + RR42_RS01040 0.16 -0.4 245,498 + RR42_RS01040 0.16 +0.1 245,498 + RR42_RS01040 0.16 +0.1 245,499 - RR42_RS01040 0.16 +0.6 245,499 - RR42_RS01040 0.16 +0.5 245,499 - RR42_RS01040 0.16 +0.4 245,499 - RR42_RS01040 0.16 -0.2 245,503 + RR42_RS01040 0.16 -0.6 245,503 + RR42_RS01040 0.16 +0.4 245,504 - RR42_RS01040 0.16 +3.1 245,504 - RR42_RS01040 0.16 -0.9 245,504 - RR42_RS01040 0.16 -0.5 245,504 - RR42_RS01040 0.16 +0.2 245,504 - RR42_RS01040 0.16 +0.2 245,513 + RR42_RS01040 0.17 +0.7 245,534 + RR42_RS01040 0.19 -0.6 245,534 + RR42_RS01040 0.19 +1.1 246,310 + -0.4 246,311 - -0.3 246,345 + +0.8 246,346 - +0.6 246,346 - +0.5 246,464 + +0.3 246,520 + +0.9 246,521 - +1.2 246,811 + RR42_RS01045 0.56 -0.7 246,812 - RR42_RS01045 0.56 -1.1 247,050 + -0.4 247,050 + -1.5 247,051 - +0.8 247,051 - -0.4 247,056 + -0.7 247,057 - +0.1 247,147 + +1.1 247,147 + +1.7 247,147 + +0.7 247,147 + +0.1 247,148 - +0.1 247,148 - -0.5 247,188 - +0.2 247,188 - -0.4 247,244 + -0.1 247,245 - +0.4
Or see this region's nucleotide sequence