Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00205 and RR42_RS00210 overlap by 4 nucleotides RR42_RS00210 and RR42_RS00215 are separated by 12 nucleotides RR42_RS00215 and RR42_RS00220 are separated by 40 nucleotides
RR42_RS00205: RR42_RS00205 - branched-chain amino acid ABC transporter ATP-binding protein, at 66,426 to 67,211
_RS00205
RR42_RS00210: RR42_RS00210 - ABC transporter ATP-binding protein, at 67,208 to 67,933
_RS00210
RR42_RS00215: RR42_RS00215 - branched-chain amino acid ABC transporter ATP-binding protein, at 67,946 to 69,235
_RS00215
RR42_RS00220: RR42_RS00220 - peptidase M20, at 69,276 to 70,568
_RS00220
Position (kb) 67
68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.122 kb on + strand, within RR42_RS00205 at 67.122 kb on + strand, within RR42_RS00205 at 67.122 kb on + strand, within RR42_RS00205 at 67.122 kb on + strand, within RR42_RS00205 at 67.123 kb on - strand, within RR42_RS00205 at 67.123 kb on - strand, within RR42_RS00205 at 67.189 kb on - strand at 67.535 kb on + strand, within RR42_RS00210 at 67.536 kb on - strand, within RR42_RS00210 at 67.584 kb on - strand, within RR42_RS00210 at 67.690 kb on + strand, within RR42_RS00210 at 67.691 kb on - strand, within RR42_RS00210 at 67.737 kb on - strand, within RR42_RS00210 at 67.839 kb on - strand, within RR42_RS00210 at 67.844 kb on + strand, within RR42_RS00210 at 68.033 kb on + strand at 68.200 kb on + strand, within RR42_RS00215 at 68.200 kb on + strand, within RR42_RS00215 at 68.201 kb on - strand, within RR42_RS00215 at 68.201 kb on - strand, within RR42_RS00215 at 68.207 kb on + strand, within RR42_RS00215 at 68.207 kb on + strand, within RR42_RS00215 at 68.207 kb on + strand, within RR42_RS00215 at 68.835 kb on - strand, within RR42_RS00215 at 69.445 kb on - strand, within RR42_RS00220 at 69.601 kb on - strand, within RR42_RS00220 at 69.765 kb on + strand, within RR42_RS00220 at 70.069 kb on - strand, within RR42_RS00220 at 70.074 kb on + strand, within RR42_RS00220 at 70.165 kb on + strand, within RR42_RS00220 at 70.165 kb on + strand, within RR42_RS00220 at 70.177 kb on + strand, within RR42_RS00220 at 70.177 kb on + strand, within RR42_RS00220 at 70.177 kb on + strand, within RR42_RS00220
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 67,122 + RR42_RS00205 0.89 +0.3 67,122 + RR42_RS00205 0.89 +0.2 67,122 + RR42_RS00205 0.89 -0.5 67,122 + RR42_RS00205 0.89 -0.9 67,123 - RR42_RS00205 0.89 +0.9 67,123 - RR42_RS00205 0.89 -0.7 67,189 - -1.9 67,535 + RR42_RS00210 0.45 -0.0 67,536 - RR42_RS00210 0.45 +0.3 67,584 - RR42_RS00210 0.52 -0.0 67,690 + RR42_RS00210 0.66 +0.6 67,691 - RR42_RS00210 0.67 +0.1 67,737 - RR42_RS00210 0.73 -0.6 67,839 - RR42_RS00210 0.87 +1.1 67,844 + RR42_RS00210 0.88 +0.1 68,033 + -0.5 68,200 + RR42_RS00215 0.20 +0.6 68,200 + RR42_RS00215 0.20 +1.0 68,201 - RR42_RS00215 0.20 -0.5 68,201 - RR42_RS00215 0.20 -0.4 68,207 + RR42_RS00215 0.20 +1.1 68,207 + RR42_RS00215 0.20 -0.3 68,207 + RR42_RS00215 0.20 +0.3 68,835 - RR42_RS00215 0.69 +2.1 69,445 - RR42_RS00220 0.13 +0.1 69,601 - RR42_RS00220 0.25 +0.1 69,765 + RR42_RS00220 0.38 +1.1 70,069 - RR42_RS00220 0.61 -0.5 70,074 + RR42_RS00220 0.62 -0.1 70,165 + RR42_RS00220 0.69 +0.4 70,165 + RR42_RS00220 0.69 +0.1 70,177 + RR42_RS00220 0.70 +0.1 70,177 + RR42_RS00220 0.70 +0.5 70,177 + RR42_RS00220 0.70 -0.8
Or see this region's nucleotide sequence