Experiment: 1-ethyl-3-methylimidazolium chloride 80 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6023 and Pf1N1B4_6024 are separated by 374 nucleotides Pf1N1B4_6024 and Pf1N1B4_6025 are separated by 290 nucleotides Pf1N1B4_6025 and Pf1N1B4_6026 are separated by 72 nucleotides
Pf1N1B4_6023 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 489,159 to 491,081
_6023
Pf1N1B4_6024 - FIG00953292: hypothetical protein, at 491,456 to 491,758
_6024
Pf1N1B4_6025 - Cold shock protein CspG, at 492,049 to 492,261
_6025
Pf1N1B4_6026 - lipoprotein, putative, at 492,334 to 492,651
_6026
Position (kb) 491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 491.422 kb on + strand at 491.423 kb on - strand at 491.472 kb on + strand at 491.472 kb on + strand at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand, within Pf1N1B4_6024 at 491.552 kb on + strand at 491.553 kb on - strand, within Pf1N1B4_6024 at 491.808 kb on + strand at 491.828 kb on - strand at 491.974 kb on + strand at 491.975 kb on - strand at 491.980 kb on - strand at 492.014 kb on + strand at 492.014 kb on + strand at 492.015 kb on - strand at 492.017 kb on + strand at 492.017 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.026 kb on + strand at 492.027 kb on - strand at 492.027 kb on - strand at 492.028 kb on + strand at 492.029 kb on - strand at 492.043 kb on + strand at 492.043 kb on + strand at 492.044 kb on - strand at 492.075 kb on + strand at 492.076 kb on - strand, within Pf1N1B4_6025 at 492.143 kb on + strand, within Pf1N1B4_6025 at 492.143 kb on + strand, within Pf1N1B4_6025 at 492.156 kb on + strand, within Pf1N1B4_6025 at 492.259 kb on + strand at 492.260 kb on - strand at 492.586 kb on - strand, within Pf1N1B4_6026 at 492.586 kb on - strand, within Pf1N1B4_6026 at 492.586 kb on - strand, within Pf1N1B4_6026 at 492.671 kb on - strand at 492.674 kb on + strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand at 492.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 80 mM remove 491,422 + -0.1 491,423 - -0.5 491,472 + +0.8 491,472 + -0.0 491,552 + Pf1N1B4_6024 0.32 -1.6 491,552 + Pf1N1B4_6024 0.32 -1.5 491,552 + Pf1N1B4_6024 0.32 -2.3 491,552 + Pf1N1B4_6024 0.32 -0.8 491,552 + Pf1N1B4_6024 0.32 -0.2 491,552 + -1.0 491,553 - Pf1N1B4_6024 0.32 -0.3 491,808 + +1.5 491,828 - -1.2 491,974 + -1.6 491,975 - +2.8 491,980 - +1.4 492,014 + +0.5 492,014 + -1.4 492,015 - +1.5 492,017 + +2.1 492,017 + -1.4 492,026 + -1.3 492,026 + -1.8 492,026 + +0.1 492,026 + -1.5 492,026 + -2.9 492,026 + -2.3 492,027 - -0.4 492,027 - -1.0 492,028 + -0.6 492,029 - -2.3 492,043 + -2.6 492,043 + -1.8 492,044 - -0.5 492,075 + -0.5 492,076 - Pf1N1B4_6025 0.13 -0.5 492,143 + Pf1N1B4_6025 0.44 -0.2 492,143 + Pf1N1B4_6025 0.44 -0.3 492,156 + Pf1N1B4_6025 0.50 -1.0 492,259 + -2.4 492,260 - -0.0 492,586 - Pf1N1B4_6026 0.79 -0.0 492,586 - Pf1N1B4_6026 0.79 -0.5 492,586 - Pf1N1B4_6026 0.79 -0.5 492,671 - -1.0 492,674 + -0.5 492,675 - -0.7 492,675 - -0.5 492,675 - +0.4 492,675 - +0.3 492,675 - -0.2 492,675 - -0.9 492,675 - +1.3 492,675 - -0.0 492,675 - +0.4 492,675 - -0.5 492,675 - -0.2
Or see this region's nucleotide sequence