Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2619

Experiment: 1-ethyl-3-methylimidazolium chloride 80 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium chloride 80 mM
2,958,404	-		Pf1N1B4_2617	0.27	+0.9
2,958,440	+				+1.9
2,958,441	-				+0.3
2,958,492	+		Pf1N1B4_2617	0.48	+0.3
2,958,612	+		Pf1N1B4_2617	0.76	+0.1
2,958,612	+		Pf1N1B4_2617	0.76	-0.7
2,958,612	+		Pf1N1B4_2617	0.76	-2.3
2,958,612	+				+0.3
2,958,613	-		Pf1N1B4_2617	0.76	+0.9
2,958,657	+		Pf1N1B4_2617	0.86	+0.6
2,958,657	+		Pf1N1B4_2617	0.86	-1.3
2,958,657	+		Pf1N1B4_2617	0.86	+0.5
2,958,657	+		Pf1N1B4_2617	0.86	-1.3
2,958,657	+		Pf1N1B4_2617	0.86	+0.6
2,958,657	+		Pf1N1B4_2617	0.86	-0.3
2,958,658	-		Pf1N1B4_2617	0.86	-1.9
2,958,658	-		Pf1N1B4_2617	0.86	+2.5
2,958,658	-		Pf1N1B4_2617	0.86	+0.5
2,958,658	-		Pf1N1B4_2617	0.86	+0.9
2,958,658	-		Pf1N1B4_2617	0.86	-1.0
2,958,658	-		Pf1N1B4_2617	0.86	+0.4
2,958,728	+				-0.5
2,958,729	-				-1.3
2,958,729	-				-0.8
2,958,732	+				+1.0
2,958,733	-				-1.0
2,958,756	+				+0.3
2,958,756	+				-1.0
2,958,756	+				-0.2
2,958,756	+				-1.3
2,958,757	-				-2.5
2,958,864	+		Pf1N1B4_2618	0.20	+0.2
2,958,864	+		Pf1N1B4_2618	0.20	-1.3
2,958,864	+		Pf1N1B4_2618	0.20	-0.1
2,958,864	+		Pf1N1B4_2618	0.20	-1.2
2,958,864	+		Pf1N1B4_2618	0.20	-1.0
2,958,864	+		Pf1N1B4_2618	0.20	-0.6
2,958,891	+		Pf1N1B4_2618	0.24	+0.4
2,958,891	+		Pf1N1B4_2618	0.24	-1.3
2,958,891	+		Pf1N1B4_2618	0.24	-1.3
2,958,892	-		Pf1N1B4_2618	0.24	+0.7
2,958,972	+		Pf1N1B4_2618	0.36	-0.9
2,958,972	+		Pf1N1B4_2618	0.36	+0.4
2,958,973	-		Pf1N1B4_2618	0.36	-2.0
2,958,973	-				+1.3
2,958,993	+				-0.3
2,958,993	+		Pf1N1B4_2618	0.39	+0.5
2,958,993	+		Pf1N1B4_2618	0.39	-0.3
2,958,994	-		Pf1N1B4_2618	0.39	-0.3
2,959,065	+		Pf1N1B4_2618	0.49	-0.3
2,959,065	+		Pf1N1B4_2618	0.49	+0.7
2,959,065	+		Pf1N1B4_2618	0.49	+0.1
2,959,065	+		Pf1N1B4_2618	0.49	+1.3
2,959,065	+		Pf1N1B4_2618	0.49	+0.1
2,959,065	+				+1.3
2,959,065	+		Pf1N1B4_2618	0.49	+0.9
2,959,065	+		Pf1N1B4_2618	0.49	+0.2
2,959,065	+		Pf1N1B4_2618	0.49	+0.7
2,959,066	-		Pf1N1B4_2618	0.50	-1.0
2,959,066	-		Pf1N1B4_2618	0.50	-1.3
2,959,066	-		Pf1N1B4_2618	0.50	-1.0
2,959,158	+		Pf1N1B4_2618	0.63	-0.7
2,959,158	+		Pf1N1B4_2618	0.63	-0.3
2,959,158	+		Pf1N1B4_2618	0.63	-0.5
2,959,159	-		Pf1N1B4_2618	0.63	-1.3
2,959,159	-		Pf1N1B4_2618	0.63	+0.3
2,959,161	+		Pf1N1B4_2618	0.64	+1.7
2,959,161	+		Pf1N1B4_2618	0.64	-0.7
2,959,161	+		Pf1N1B4_2618	0.64	+1.7
2,959,394	-				-1.9
2,959,438	+				+1.5
2,959,438	+				+0.1
2,959,438	+				+1.3
2,959,439	-				-1.0
2,959,439	-				-1.0
2,959,439	-				-1.0
2,959,603	+		Pf1N1B4_2619	0.20	+0.3
2,959,677	+		Pf1N1B4_2619	0.28	-1.1
2,959,677	+		Pf1N1B4_2619	0.28	-1.2
2,959,920	-		Pf1N1B4_2619	0.51	+0.5
2,960,010	+		Pf1N1B4_2619	0.60	-0.9
2,960,055	+		Pf1N1B4_2619	0.64	-1.3
2,960,056	-		Pf1N1B4_2619	0.64	+0.1
2,960,112	+		Pf1N1B4_2619	0.70	-0.7
2,960,112	+		Pf1N1B4_2619	0.70	+0.9
2,960,112	+				+0.3
2,960,112	+		Pf1N1B4_2619	0.70	-1.5
2,960,112	+		Pf1N1B4_2619	0.70	-1.3
2,960,113	-		Pf1N1B4_2619	0.70	+0.3
2,960,113	-		Pf1N1B4_2619	0.70	-0.7
2,960,260	+		Pf1N1B4_2619	0.84	-0.3
2,960,260	+		Pf1N1B4_2619	0.84	-0.2
2,960,261	-				+0.5
2,960,261	-		Pf1N1B4_2619	0.84	-1.0
2,960,261	-		Pf1N1B4_2619	0.84	-0.7
2,960,261	-		Pf1N1B4_2619	0.84	-1.9
2,960,261	-		Pf1N1B4_2619	0.84	-1.0
2,960,266	+		Pf1N1B4_2619	0.84	-0.9
2,960,266	+		Pf1N1B4_2619	0.84	+0.9
2,960,266	+		Pf1N1B4_2619	0.84	+0.2
2,960,266	+		Pf1N1B4_2619	0.84	-0.5
2,960,267	-		Pf1N1B4_2619	0.85	-1.7
2,960,267	-		Pf1N1B4_2619	0.85	-1.5
2,960,267	-		Pf1N1B4_2619	0.85	-1.0
2,960,267	-		Pf1N1B4_2619	0.85	-1.7
2,960,267	-		Pf1N1B4_2619	0.85	-2.5
2,960,267	-		Pf1N1B4_2619	0.85	-0.7
2,960,270	+		Pf1N1B4_2619	0.85	+0.6
2,960,271	-		Pf1N1B4_2619	0.85	-1.0
2,960,323	+				-0.0
2,960,323	+				-1.0
2,960,323	+				-2.4
2,960,324	-				+1.0
2,960,324	-				+0.7
2,960,324	-				-1.7
2,960,324	-				-1.5
2,960,334	+				+0.3
2,960,334	+				-0.3
2,960,334	+				+0.7
2,960,334	+				-1.0
2,960,334	+				-0.7
2,960,334	+				-0.2
2,960,334	+				-1.0
2,960,334	+				-1.0
2,960,334	+				+1.7
2,960,334	+				-1.0
2,960,334	+				-2.0
2,960,335	-				-2.4
2,960,335	-				-0.9
2,960,335	-				+0.3
2,960,335	-				+0.3
2,960,335	-				+1.3
2,960,335	-				-0.7
2,960,335	-				+1.3
2,960,340	+				+0.3
2,960,340	+				-0.7
2,960,340	+				-0.7
2,960,340	+				+0.1
2,960,340	+				-0.5
2,960,341	-				+0.1
2,960,341	-				+0.9
2,960,341	-				+0.1
2,960,341	-				-0.9
2,960,398	+				-0.3
2,960,398	+				+0.5
2,960,398	+				+0.3
2,960,398	+				+0.1
2,960,399	-				+1.3
2,960,399	-				-0.7
2,960,399	-				-0.4
2,960,399	-				+1.6
2,960,409	+				-0.1
2,960,409	+				+2.1
2,960,409	+				-0.9
2,960,409	+				+1.0
2,960,410	-				+1.3
2,960,427	+				+1.3
2,960,427	+				-0.3
2,960,427	+				-0.8
2,960,427	+				-0.8
2,960,427	+				+0.3
2,960,427	+				-0.9
2,960,427	+				+0.5
2,960,427	+				+0.9
2,960,427	+				-1.2
2,960,427	+				-1.0
2,960,428	-				-0.0
2,960,428	-				+0.5
2,960,428	-				+2.3
2,960,463	+				-0.7
2,960,510	+				-0.5
2,960,510	+				+0.9
2,960,528	+				-1.0
2,960,532	+				-0.0
2,960,533	-				-0.5
2,960,538	+				+1.9
2,960,552	+				+0.1
2,960,552	+				+0.1
2,960,576	+		Pf1N1B4_2620	0.14	-0.3
2,960,576	+		Pf1N1B4_2620	0.14	-0.7
2,960,576	+		Pf1N1B4_2620	0.14	+0.5
2,960,576	+		Pf1N1B4_2620	0.14	-0.8
2,960,576	+				+0.7
2,960,576	+		Pf1N1B4_2620	0.14	+0.9
2,960,576	+		Pf1N1B4_2620	0.14	+0.1
2,960,577	-		Pf1N1B4_2620	0.14	-0.7
2,960,577	-		Pf1N1B4_2620	0.14	-1.8
2,960,577	-		Pf1N1B4_2620	0.14	-0.8
2,960,577	-		Pf1N1B4_2620	0.14	-0.5
2,960,632	+		Pf1N1B4_2620	0.24	+0.1
2,960,632	+		Pf1N1B4_2620	0.24	+0.4
2,960,633	-		Pf1N1B4_2620	0.24	-1.7
2,960,633	-		Pf1N1B4_2620	0.24	-0.3
2,960,705	-		Pf1N1B4_2620	0.37	+0.3
2,960,705	-		Pf1N1B4_2620	0.37	+1.3
2,960,792	+		Pf1N1B4_2620	0.52	-1.3
2,960,793	-		Pf1N1B4_2620	0.53	-1.7
2,960,798	+		Pf1N1B4_2620	0.54	-0.3
2,960,799	-		Pf1N1B4_2620	0.54	-1.6
2,960,846	+		Pf1N1B4_2620	0.62	-1.3
2,960,966	+		Pf1N1B4_2620	0.83	+0.5
2,960,967	-		Pf1N1B4_2620	0.84	+0.7
2,960,975	-		Pf1N1B4_2620	0.85	+0.3
2,961,084	+				-0.0