Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09650

Experiment: L-mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS09640 and HSERO_RS09645 are separated by 93 nucleotidesHSERO_RS09645 and HSERO_RS09650 are separated by 177 nucleotidesHSERO_RS09650 and HSERO_RS09655 are separated by 1 nucleotides HSERO_RS09640: HSERO_RS09640 - peptidase, at 2,188,163 to 2,189,641 _RS09640 HSERO_RS09645: HSERO_RS09645 - glutaredoxin, at 2,189,735 to 2,190,028 _RS09645 HSERO_RS09650: HSERO_RS09650 - elongation factor 4, at 2,190,206 to 2,191,999 _RS09650 HSERO_RS09655: HSERO_RS09655 - signal peptidase, at 2,192,001 to 2,192,915 _RS09655 Position (kb) 2190 2191 2192Strain fitness (log2 ratio) -2 -1 0 1at 2189.373 kb on + strand, within HSERO_RS09640at 2189.487 kb on + strand, within HSERO_RS09640at 2189.574 kb on + strandat 2191.256 kb on + strand, within HSERO_RS09650at 2191.457 kb on + strand, within HSERO_RS09650

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Per-strain Table

Position Strand Gene LocusTag Fraction L-mannose (C)
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2,189,373 + HSERO_RS09640 0.82 +1.2
2,189,487 + HSERO_RS09640 0.90 -0.9
2,189,574 + +0.6
2,191,256 + HSERO_RS09650 0.59 -1.2
2,191,457 + HSERO_RS09650 0.70 -1.8

Or see this region's nucleotide sequence