Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03635

Experiment: L-mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03630 and HSERO_RS03635 are separated by 62 nucleotidesHSERO_RS03635 and HSERO_RS03640 are separated by 97 nucleotides HSERO_RS03630: HSERO_RS03630 - fructose transporter, at 792,804 to 793,421 _RS03630 HSERO_RS03635: HSERO_RS03635 - D-mannose ABC transporter, substrate-binding component (from data), at 793,484 to 794,434 _RS03635 HSERO_RS03640: HSERO_RS03640 - D-mannose ABC transporter, ATPase component (from data), at 794,532 to 796,037 _RS03640 Position (kb) 793 794 795Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 792.872 kb on - strand, within HSERO_RS03630at 792.909 kb on + strand, within HSERO_RS03630at 792.916 kb on - strand, within HSERO_RS03630at 792.916 kb on - strand, within HSERO_RS03630at 793.165 kb on - strand, within HSERO_RS03630at 793.177 kb on - strand, within HSERO_RS03630at 793.326 kb on - strand, within HSERO_RS03630at 793.349 kb on - strand, within HSERO_RS03630at 793.437 kb on + strandat 793.507 kb on + strandat 793.544 kb on - strandat 793.790 kb on - strand, within HSERO_RS03635at 793.861 kb on + strand, within HSERO_RS03635at 793.959 kb on - strand, within HSERO_RS03635at 794.570 kb on - strandat 794.687 kb on + strand, within HSERO_RS03640at 794.704 kb on - strand, within HSERO_RS03640at 794.823 kb on + strand, within HSERO_RS03640at 794.827 kb on + strand, within HSERO_RS03640at 795.026 kb on - strand, within HSERO_RS03640at 795.055 kb on + strand, within HSERO_RS03640at 795.097 kb on - strand, within HSERO_RS03640at 795.379 kb on + strand, within HSERO_RS03640at 795.387 kb on - strand, within HSERO_RS03640at 795.402 kb on + strand, within HSERO_RS03640

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Per-strain Table

Position Strand Gene LocusTag Fraction L-mannose (C)
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792,872 - HSERO_RS03630 0.11 -4.0
792,909 + HSERO_RS03630 0.17 -3.4
792,916 - HSERO_RS03630 0.18 -4.6
792,916 - HSERO_RS03630 0.18 -5.9
793,165 - HSERO_RS03630 0.58 -4.1
793,177 - HSERO_RS03630 0.60 -2.8
793,326 - HSERO_RS03630 0.84 -3.7
793,349 - HSERO_RS03630 0.88 -3.9
793,437 + -0.1
793,507 + -0.4
793,544 - -5.4
793,790 - HSERO_RS03635 0.32 -1.8
793,861 + HSERO_RS03635 0.40 -4.3
793,959 - HSERO_RS03635 0.50 -4.4
794,570 - -3.1
794,687 + HSERO_RS03640 0.10 -2.6
794,704 - HSERO_RS03640 0.11 -2.8
794,823 + HSERO_RS03640 0.19 -4.4
794,827 + HSERO_RS03640 0.20 -3.4
795,026 - HSERO_RS03640 0.33 -4.3
795,055 + HSERO_RS03640 0.35 -2.6
795,097 - HSERO_RS03640 0.38 -4.6
795,379 + HSERO_RS03640 0.56 -2.1
795,387 - HSERO_RS03640 0.57 -2.2
795,402 + HSERO_RS03640 0.58 -2.5

Or see this region's nucleotide sequence