Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02318

Experiment: PYE with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02315 and CCNA_02316 overlap by 4 nucleotidesCCNA_02316 and CCNA_02317 overlap by 91 nucleotidesCCNA_02317 and CCNA_02318 are separated by 28 nucleotidesCCNA_02318 and CCNA_02319 are separated by 116 nucleotidesCCNA_02319 and CCNA_02320 are separated by 118 nucleotides CCNA_02315: CCNA_02315 - Cro/CI-family transcriptional regulator, at 2,460,236 to 2,460,430 _02315 CCNA_02316: CCNA_02316 - hypothetical protein, at 2,460,427 to 2,460,942 _02316 CCNA_02317: CCNA_02317 - hypothetical protein, at 2,460,852 to 2,461,289 _02317 CCNA_02318: CCNA_02318 - hypothetical protein, at 2,461,318 to 2,461,581 _02318 CCNA_02319: CCNA_02319 - hypothetical protein, at 2,461,698 to 2,462,216 _02319 CCNA_02320: CCNA_02320 - 2'-deoxycytidine 5'-triphosphate deaminase, at 2,462,335 to 2,463,360 _02320 Position (kb) 2461 2462Strain fitness (log2 ratio) -2 -1 0 1at 2460.389 kb on - strand, within CCNA_02315at 2460.452 kb on + strandat 2460.453 kb on - strandat 2460.460 kb on - strandat 2460.471 kb on - strandat 2460.498 kb on - strand, within CCNA_02316at 2460.512 kb on - strand, within CCNA_02316at 2460.569 kb on - strand, within CCNA_02316at 2460.569 kb on - strand, within CCNA_02316at 2460.569 kb on - strand, within CCNA_02316at 2460.569 kb on - strand, within CCNA_02316at 2460.569 kb on - strand, within CCNA_02316at 2460.575 kb on + strand, within CCNA_02316at 2460.594 kb on - strand, within CCNA_02316at 2460.690 kb on - strand, within CCNA_02316at 2460.713 kb on + strand, within CCNA_02316at 2460.721 kb on - strand, within CCNA_02316at 2460.730 kb on + strand, within CCNA_02316at 2460.740 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.743 kb on - strand, within CCNA_02316at 2460.764 kb on - strand, within CCNA_02316at 2460.771 kb on - strand, within CCNA_02316at 2460.825 kb on - strand, within CCNA_02316at 2460.825 kb on - strand, within CCNA_02316at 2460.855 kb on + strandat 2460.872 kb on + strandat 2460.877 kb on + strandat 2460.885 kb on - strandat 2460.895 kb on + strandat 2460.900 kb on + strandat 2460.908 kb on - strandat 2460.949 kb on + strand, within CCNA_02317at 2460.949 kb on + strand, within CCNA_02317at 2460.957 kb on - strand, within CCNA_02317at 2460.957 kb on - strand, within CCNA_02317at 2460.994 kb on + strand, within CCNA_02317at 2461.025 kb on + strand, within CCNA_02317at 2461.025 kb on + strand, within CCNA_02317at 2461.033 kb on - strand, within CCNA_02317at 2461.036 kb on + strand, within CCNA_02317at 2461.036 kb on + strand, within CCNA_02317at 2461.036 kb on + strand, within CCNA_02317at 2461.044 kb on - strand, within CCNA_02317at 2461.044 kb on - strand, within CCNA_02317at 2461.061 kb on - strand, within CCNA_02317at 2461.130 kb on - strand, within CCNA_02317at 2461.130 kb on - strand, within CCNA_02317at 2461.247 kb on - strandat 2461.247 kb on - strandat 2461.263 kb on + strandat 2461.310 kb on - strandat 2461.326 kb on - strandat 2461.360 kb on + strand, within CCNA_02318at 2461.379 kb on - strand, within CCNA_02318at 2461.379 kb on - strand, within CCNA_02318at 2461.426 kb on - strand, within CCNA_02318at 2461.440 kb on + strand, within CCNA_02318at 2461.440 kb on + strand, within CCNA_02318at 2461.441 kb on + strand, within CCNA_02318at 2461.444 kb on - strand, within CCNA_02318at 2461.449 kb on - strand, within CCNA_02318at 2461.451 kb on + strand, within CCNA_02318at 2461.479 kb on - strand, within CCNA_02318at 2461.489 kb on + strand, within CCNA_02318at 2461.790 kb on - strand, within CCNA_02319at 2461.805 kb on - strand, within CCNA_02319at 2461.822 kb on + strand, within CCNA_02319at 2461.822 kb on + strand, within CCNA_02319at 2461.836 kb on + strand, within CCNA_02319at 2461.837 kb on - strand, within CCNA_02319at 2461.844 kb on - strand, within CCNA_02319at 2461.857 kb on + strand, within CCNA_02319at 2461.865 kb on - strand, within CCNA_02319at 2461.870 kb on - strand, within CCNA_02319at 2461.903 kb on - strand, within CCNA_02319at 2461.987 kb on - strand, within CCNA_02319at 2462.010 kb on + strand, within CCNA_02319at 2462.012 kb on + strand, within CCNA_02319at 2462.020 kb on - strand, within CCNA_02319at 2462.039 kb on + strand, within CCNA_02319at 2462.044 kb on + strand, within CCNA_02319at 2462.052 kb on - strand, within CCNA_02319at 2462.052 kb on - strand, within CCNA_02319at 2462.052 kb on - strand, within CCNA_02319at 2462.062 kb on + strand, within CCNA_02319at 2462.098 kb on + strand, within CCNA_02319at 2462.250 kb on + strandat 2462.289 kb on - strandat 2462.318 kb on + strandat 2462.331 kb on - strandat 2462.353 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml
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2,460,389 - CCNA_02315 0.78 +0.9
2,460,452 + +0.3
2,460,453 - +0.8
2,460,460 - +0.6
2,460,471 - +0.5
2,460,498 - CCNA_02316 0.14 -0.3
2,460,512 - CCNA_02316 0.16 +0.8
2,460,569 - CCNA_02316 0.28 -0.1
2,460,569 - CCNA_02316 0.28 -0.0
2,460,569 - CCNA_02316 0.28 +0.3
2,460,569 - CCNA_02316 0.28 +0.1
2,460,569 - CCNA_02316 0.28 +0.4
2,460,575 + CCNA_02316 0.29 -1.4
2,460,594 - CCNA_02316 0.32 +0.1
2,460,690 - CCNA_02316 0.51 +0.5
2,460,713 + CCNA_02316 0.55 -0.1
2,460,721 - CCNA_02316 0.57 +0.3
2,460,730 + CCNA_02316 0.59 +1.0
2,460,740 - CCNA_02316 0.61 -0.4
2,460,743 - CCNA_02316 0.61 -0.2
2,460,743 - CCNA_02316 0.61 +0.7
2,460,743 - CCNA_02316 0.61 -0.2
2,460,764 - CCNA_02316 0.65 +0.2
2,460,771 - CCNA_02316 0.67 +0.0
2,460,825 - CCNA_02316 0.77 +0.2
2,460,825 - CCNA_02316 0.77 +0.5
2,460,855 + +0.9
2,460,872 + -0.1
2,460,877 + -0.4
2,460,885 - +1.7
2,460,895 + +0.3
2,460,900 + +0.4
2,460,908 - -0.1
2,460,949 + CCNA_02317 0.22 +0.7
2,460,949 + CCNA_02317 0.22 -0.1
2,460,957 - CCNA_02317 0.24 -1.2
2,460,957 - CCNA_02317 0.24 -0.7
2,460,994 + CCNA_02317 0.32 +0.2
2,461,025 + CCNA_02317 0.39 +0.5
2,461,025 + CCNA_02317 0.39 +0.9
2,461,033 - CCNA_02317 0.41 -1.3
2,461,036 + CCNA_02317 0.42 +0.9
2,461,036 + CCNA_02317 0.42 +0.5
2,461,036 + CCNA_02317 0.42 +1.0
2,461,044 - CCNA_02317 0.44 -1.5
2,461,044 - CCNA_02317 0.44 +0.3
2,461,061 - CCNA_02317 0.48 +0.9
2,461,130 - CCNA_02317 0.63 +0.1
2,461,130 - CCNA_02317 0.63 -2.0
2,461,247 - +0.1
2,461,247 - -0.1
2,461,263 + -1.2
2,461,310 - +0.6
2,461,326 - -2.0
2,461,360 + CCNA_02318 0.16 -0.4
2,461,379 - CCNA_02318 0.23 -0.8
2,461,379 - CCNA_02318 0.23 +1.7
2,461,426 - CCNA_02318 0.41 -0.0
2,461,440 + CCNA_02318 0.46 -0.6
2,461,440 + CCNA_02318 0.46 -1.7
2,461,441 + CCNA_02318 0.47 +0.9
2,461,444 - CCNA_02318 0.48 -0.2
2,461,449 - CCNA_02318 0.50 -0.8
2,461,451 + CCNA_02318 0.50 -2.2
2,461,479 - CCNA_02318 0.61 +1.4
2,461,489 + CCNA_02318 0.65 -1.3
2,461,790 - CCNA_02319 0.18 -0.0
2,461,805 - CCNA_02319 0.21 +0.5
2,461,822 + CCNA_02319 0.24 -0.9
2,461,822 + CCNA_02319 0.24 -0.6
2,461,836 + CCNA_02319 0.27 -0.6
2,461,837 - CCNA_02319 0.27 -0.3
2,461,844 - CCNA_02319 0.28 -0.6
2,461,857 + CCNA_02319 0.31 -0.4
2,461,865 - CCNA_02319 0.32 +0.7
2,461,870 - CCNA_02319 0.33 -1.3
2,461,903 - CCNA_02319 0.39 +0.6
2,461,987 - CCNA_02319 0.56 -1.0
2,462,010 + CCNA_02319 0.60 +1.6
2,462,012 + CCNA_02319 0.61 +0.9
2,462,020 - CCNA_02319 0.62 -0.9
2,462,039 + CCNA_02319 0.66 +0.9
2,462,044 + CCNA_02319 0.67 +1.0
2,462,052 - CCNA_02319 0.68 +0.2
2,462,052 - CCNA_02319 0.68 +0.0
2,462,052 - CCNA_02319 0.68 +1.0
2,462,062 + CCNA_02319 0.70 -0.1
2,462,098 + CCNA_02319 0.77 +0.6
2,462,250 + +0.1
2,462,289 - +0.6
2,462,318 + -0.4
2,462,331 - -0.2
2,462,353 - +0.9

Or see this region's nucleotide sequence