Experiment: PYE with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00904 and CCNA_00905 are separated by 28 nucleotides CCNA_00905 and CCNA_00906 are separated by 69 nucleotides CCNA_00906 and CCNA_00907 overlap by 4 nucleotides CCNA_00907 and CCNA_00908 overlap by 64 nucleotides
CCNA_00904: CCNA_00904 - inositol ABC transport system, permease protein IatP, at 984,482 to 985,480
_00904
CCNA_00905: CCNA_00905 - exonuclease-endonuclease-phosphatase (EEP1) protein, at 985,509 to 986,396
_00905
CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380
_00906
CCNA_00907: CCNA_00907 - hypothetical protein, at 987,377 to 988,105
_00907
CCNA_00908: CCNA_00908 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 988,042 to 989,181
_00908
Position (kb) 986
987
988 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 985.467 kb on + strand at 985.475 kb on + strand at 985.475 kb on + strand at 985.483 kb on - strand at 985.485 kb on + strand at 985.492 kb on + strand at 985.497 kb on + strand at 985.500 kb on - strand at 985.505 kb on - strand at 985.505 kb on - strand at 985.505 kb on - strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.514 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.519 kb on + strand at 985.521 kb on - strand at 985.567 kb on - strand at 985.567 kb on - strand at 985.570 kb on - strand at 985.607 kb on + strand, within CCNA_00905 at 985.607 kb on + strand, within CCNA_00905 at 985.673 kb on + strand, within CCNA_00905 at 985.678 kb on + strand, within CCNA_00905 at 985.678 kb on + strand, within CCNA_00905 at 985.696 kb on - strand, within CCNA_00905 at 985.798 kb on + strand, within CCNA_00905 at 985.798 kb on + strand, within CCNA_00905 at 985.806 kb on - strand, within CCNA_00905 at 985.849 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.873 kb on + strand, within CCNA_00905 at 985.873 kb on + strand, within CCNA_00905 at 985.896 kb on + strand, within CCNA_00905 at 985.896 kb on + strand, within CCNA_00905 at 985.904 kb on - strand, within CCNA_00905 at 985.944 kb on + strand, within CCNA_00905 at 985.956 kb on - strand, within CCNA_00905 at 985.966 kb on + strand, within CCNA_00905 at 985.966 kb on + strand, within CCNA_00905 at 985.971 kb on + strand, within CCNA_00905 at 986.012 kb on + strand, within CCNA_00905 at 986.029 kb on + strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.044 kb on + strand, within CCNA_00905 at 986.052 kb on - strand, within CCNA_00905 at 986.109 kb on + strand, within CCNA_00905 at 986.109 kb on + strand, within CCNA_00905 at 986.113 kb on + strand, within CCNA_00905 at 986.128 kb on - strand, within CCNA_00905 at 986.138 kb on + strand, within CCNA_00905 at 986.166 kb on + strand, within CCNA_00905 at 986.177 kb on + strand, within CCNA_00905 at 986.229 kb on - strand, within CCNA_00905 at 986.309 kb on - strand at 986.338 kb on + strand at 986.338 kb on + strand at 986.372 kb on + strand at 986.380 kb on - strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.399 kb on - strand at 986.399 kb on - strand at 986.399 kb on - strand at 986.427 kb on + strand at 986.427 kb on - strand at 986.434 kb on - strand at 986.448 kb on - strand at 986.463 kb on + strand at 986.519 kb on + strand at 986.532 kb on - strand at 986.552 kb on - strand at 986.565 kb on - strand, within CCNA_00906 at 986.570 kb on - strand, within CCNA_00906 at 986.570 kb on - strand, within CCNA_00906 at 986.570 kb on - strand, within CCNA_00906 at 986.583 kb on + strand, within CCNA_00906 at 986.602 kb on + strand, within CCNA_00906 at 986.602 kb on + strand, within CCNA_00906 at 986.650 kb on - strand, within CCNA_00906 at 986.666 kb on - strand, within CCNA_00906 at 986.736 kb on + strand, within CCNA_00906 at 986.736 kb on + strand, within CCNA_00906 at 986.761 kb on + strand, within CCNA_00906 at 986.761 kb on + strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.776 kb on - strand, within CCNA_00906 at 986.794 kb on + strand, within CCNA_00906 at 986.806 kb on + strand, within CCNA_00906 at 986.814 kb on - strand, within CCNA_00906 at 986.814 kb on - strand at 986.879 kb on + strand, within CCNA_00906 at 986.887 kb on - strand, within CCNA_00906 at 986.933 kb on + strand, within CCNA_00906 at 986.941 kb on - strand, within CCNA_00906 at 986.948 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.980 kb on - strand, within CCNA_00906 at 987.001 kb on + strand, within CCNA_00906 at 987.009 kb on - strand, within CCNA_00906 at 987.028 kb on + strand, within CCNA_00906 at 987.030 kb on - strand, within CCNA_00906 at 987.039 kb on + strand, within CCNA_00906 at 987.060 kb on - strand, within CCNA_00906 at 987.067 kb on - strand, within CCNA_00906 at 987.074 kb on + strand, within CCNA_00906 at 987.074 kb on + strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.127 kb on + strand, within CCNA_00906 at 987.135 kb on - strand, within CCNA_00906 at 987.135 kb on - strand, within CCNA_00906 at 987.135 kb on - strand, within CCNA_00906 at 987.142 kb on + strand, within CCNA_00906 at 987.142 kb on + strand, within CCNA_00906 at 987.144 kb on + strand, within CCNA_00906 at 987.150 kb on - strand, within CCNA_00906 at 987.152 kb on - strand, within CCNA_00906 at 987.152 kb on - strand, within CCNA_00906 at 987.157 kb on - strand, within CCNA_00906 at 987.172 kb on - strand, within CCNA_00906 at 987.231 kb on - strand, within CCNA_00906 at 987.242 kb on + strand, within CCNA_00906 at 987.247 kb on - strand, within CCNA_00906 at 987.259 kb on + strand, within CCNA_00906 at 987.259 kb on + strand, within CCNA_00906 at 987.259 kb on + strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.282 kb on - strand, within CCNA_00906 at 987.282 kb on - strand, within CCNA_00906 at 987.282 kb on - strand, within CCNA_00906 at 987.301 kb on + strand at 987.305 kb on + strand at 987.305 kb on + strand at 987.305 kb on + strand at 987.310 kb on + strand at 987.313 kb on - strand at 987.322 kb on + strand at 987.330 kb on - strand at 987.359 kb on + strand at 987.372 kb on - strand at 987.374 kb on + strand at 987.405 kb on + strand at 987.405 kb on + strand at 987.405 kb on + strand at 987.405 kb on + strand at 987.413 kb on - strand at 987.413 kb on - strand at 987.472 kb on - strand, within CCNA_00907 at 987.477 kb on - strand, within CCNA_00907 at 987.518 kb on - strand, within CCNA_00907 at 987.535 kb on - strand, within CCNA_00907 at 987.549 kb on - strand, within CCNA_00907 at 987.567 kb on - strand, within CCNA_00907 at 987.567 kb on - strand, within CCNA_00907 at 987.596 kb on + strand, within CCNA_00907 at 987.604 kb on - strand, within CCNA_00907 at 987.607 kb on + strand, within CCNA_00907 at 987.616 kb on - strand, within CCNA_00907 at 987.631 kb on - strand, within CCNA_00907 at 987.660 kb on - strand, within CCNA_00907 at 987.666 kb on - strand, within CCNA_00907 at 987.806 kb on + strand, within CCNA_00907 at 987.806 kb on + strand, within CCNA_00907 at 987.806 kb on - strand, within CCNA_00907 at 987.814 kb on - strand, within CCNA_00907 at 987.814 kb on - strand, within CCNA_00907 at 987.819 kb on - strand, within CCNA_00907 at 987.823 kb on + strand, within CCNA_00907 at 987.823 kb on + strand, within CCNA_00907 at 987.823 kb on + strand, within CCNA_00907 at 987.823 kb on + strand, within CCNA_00907 at 987.830 kb on - strand, within CCNA_00907 at 987.831 kb on - strand, within CCNA_00907 at 987.853 kb on + strand, within CCNA_00907 at 987.881 kb on - strand, within CCNA_00907 at 987.886 kb on - strand, within CCNA_00907 at 987.887 kb on - strand, within CCNA_00907 at 987.887 kb on - strand, within CCNA_00907 at 987.935 kb on - strand, within CCNA_00907 at 987.935 kb on - strand, within CCNA_00907 at 987.956 kb on + strand, within CCNA_00907 at 987.956 kb on + strand, within CCNA_00907 at 987.964 kb on - strand, within CCNA_00907 at 987.964 kb on - strand, within CCNA_00907 at 988.060 kb on - strand at 988.060 kb on - strand at 988.062 kb on + strand at 988.070 kb on - strand at 988.100 kb on + strand at 988.105 kb on + strand at 988.111 kb on + strand at 988.120 kb on - strand at 988.129 kb on - strand at 988.129 kb on - strand at 988.136 kb on + strand at 988.144 kb on - strand at 988.155 kb on + strand at 988.165 kb on + strand, within CCNA_00908 at 988.168 kb on - strand, within CCNA_00908 at 988.170 kb on + strand, within CCNA_00908 at 988.189 kb on - strand, within CCNA_00908 at 988.198 kb on - strand, within CCNA_00908 at 988.296 kb on + strand, within CCNA_00908 at 988.304 kb on - strand, within CCNA_00908 at 988.316 kb on + strand, within CCNA_00908 at 988.322 kb on + strand, within CCNA_00908 at 988.347 kb on + strand, within CCNA_00908 at 988.355 kb on - strand, within CCNA_00908 at 988.363 kb on + strand, within CCNA_00908
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml remove 985,467 + +0.0 985,475 + -0.6 985,475 + -1.4 985,483 - -0.4 985,485 + -0.2 985,492 + -0.3 985,497 + +1.2 985,500 - +0.7 985,505 - -1.1 985,505 - +2.5 985,505 - +0.1 985,507 + +0.4 985,507 + -0.1 985,507 + +0.7 985,507 + -0.5 985,507 + -0.8 985,507 + -2.0 985,507 + +0.0 985,507 + -1.5 985,507 + -1.4 985,507 + -0.1 985,507 + +1.5 985,507 + +0.3 985,507 + -1.2 985,507 + +1.6 985,507 + -0.6 985,507 + -0.2 985,507 + -0.2 985,507 + -1.0 985,507 + -0.8 985,514 - -0.8 985,515 - -1.5 985,515 - +0.5 985,515 - +0.7 985,515 - -0.9 985,515 - -0.0 985,515 - -2.3 985,515 - +1.1 985,515 - +0.4 985,515 - -0.3 985,515 - -0.7 985,515 - -0.5 985,515 - -0.6 985,519 + -0.1 985,521 - +0.5 985,567 - -0.6 985,567 - -1.0 985,570 - +1.0 985,607 + CCNA_00905 0.11 -1.5 985,607 + CCNA_00905 0.11 -1.5 985,673 + CCNA_00905 0.18 -0.6 985,678 + CCNA_00905 0.19 +0.2 985,678 + CCNA_00905 0.19 +0.5 985,696 - CCNA_00905 0.21 -1.4 985,798 + CCNA_00905 0.33 +1.5 985,798 + CCNA_00905 0.33 -1.0 985,806 - CCNA_00905 0.33 -0.9 985,849 + CCNA_00905 0.38 -0.5 985,854 + CCNA_00905 0.39 +0.5 985,854 + CCNA_00905 0.39 -0.1 985,854 + CCNA_00905 0.39 -1.1 985,862 - CCNA_00905 0.40 +0.6 985,862 - CCNA_00905 0.40 -0.9 985,862 - CCNA_00905 0.40 -1.7 985,862 - CCNA_00905 0.40 -0.2 985,873 + CCNA_00905 0.41 -1.8 985,873 + CCNA_00905 0.41 +0.5 985,896 + CCNA_00905 0.44 +0.0 985,896 + CCNA_00905 0.44 +0.5 985,904 - CCNA_00905 0.44 +1.6 985,944 + CCNA_00905 0.49 -1.4 985,956 - CCNA_00905 0.50 -0.1 985,966 + CCNA_00905 0.51 -0.4 985,966 + CCNA_00905 0.51 -0.9 985,971 + CCNA_00905 0.52 -0.7 986,012 + CCNA_00905 0.57 -1.9 986,029 + CCNA_00905 0.59 -0.9 986,037 - CCNA_00905 0.59 +2.1 986,037 - CCNA_00905 0.59 -0.9 986,037 - CCNA_00905 0.59 +1.1 986,044 + CCNA_00905 0.60 -0.6 986,052 - CCNA_00905 0.61 +0.4 986,109 + CCNA_00905 0.68 -0.6 986,109 + CCNA_00905 0.68 +0.7 986,113 + CCNA_00905 0.68 +0.3 986,128 - CCNA_00905 0.70 -0.4 986,138 + CCNA_00905 0.71 -1.9 986,166 + CCNA_00905 0.74 -0.1 986,177 + CCNA_00905 0.75 +0.6 986,229 - CCNA_00905 0.81 -0.3 986,309 - -1.3 986,338 + -0.3 986,338 + -0.6 986,372 + -0.8 986,380 - +0.1 986,391 + +1.9 986,391 + +1.9 986,391 + +1.1 986,391 + -0.4 986,399 - -0.6 986,399 - +0.4 986,399 - -0.1 986,427 + -0.6 986,427 - +0.7 986,434 - -2.5 986,448 - +1.1 986,463 + +1.8 986,519 + +4.1 986,532 - +2.2 986,552 - -0.7 986,565 - CCNA_00906 0.11 -1.0 986,570 - CCNA_00906 0.11 -1.0 986,570 - CCNA_00906 0.11 +1.5 986,570 - CCNA_00906 0.11 -1.4 986,583 + CCNA_00906 0.13 +1.7 986,602 + CCNA_00906 0.15 +1.5 986,602 + CCNA_00906 0.15 +0.1 986,650 - CCNA_00906 0.20 -0.3 986,666 - CCNA_00906 0.22 -0.2 986,736 + CCNA_00906 0.30 -0.7 986,736 + CCNA_00906 0.30 -0.6 986,761 + CCNA_00906 0.32 +0.9 986,761 + CCNA_00906 0.32 -0.8 986,769 - CCNA_00906 0.33 -0.9 986,769 - CCNA_00906 0.33 -0.2 986,769 - CCNA_00906 0.33 +0.9 986,769 - CCNA_00906 0.33 -0.8 986,769 - CCNA_00906 0.33 +2.5 986,776 - CCNA_00906 0.34 -0.3 986,794 + CCNA_00906 0.36 +1.3 986,806 + CCNA_00906 0.37 +1.7 986,814 - CCNA_00906 0.38 -2.4 986,814 - +1.7 986,879 + CCNA_00906 0.45 -1.3 986,887 - CCNA_00906 0.46 -1.4 986,933 + CCNA_00906 0.51 -1.5 986,941 - CCNA_00906 0.52 +0.0 986,948 + CCNA_00906 0.53 -1.6 986,972 + CCNA_00906 0.55 +2.5 986,972 + CCNA_00906 0.55 -0.5 986,972 + CCNA_00906 0.55 -1.2 986,972 + CCNA_00906 0.55 +1.1 986,972 + CCNA_00906 0.55 +0.5 986,980 - CCNA_00906 0.56 -1.6 987,001 + CCNA_00906 0.58 -0.2 987,009 - CCNA_00906 0.59 -0.7 987,028 + CCNA_00906 0.61 -1.2 987,030 - CCNA_00906 0.62 +2.1 987,039 + CCNA_00906 0.63 -0.5 987,060 - CCNA_00906 0.65 +0.4 987,067 - CCNA_00906 0.66 +0.6 987,074 + CCNA_00906 0.66 +0.7 987,074 + CCNA_00906 0.66 -1.6 987,095 - CCNA_00906 0.69 -0.1 987,095 - CCNA_00906 0.69 -0.1 987,095 - CCNA_00906 0.69 -1.1 987,095 - CCNA_00906 0.69 -0.8 987,127 + CCNA_00906 0.72 -1.3 987,135 - CCNA_00906 0.73 -0.2 987,135 - CCNA_00906 0.73 +0.2 987,135 - CCNA_00906 0.73 +0.5 987,142 + CCNA_00906 0.74 +0.6 987,142 + CCNA_00906 0.74 -0.6 987,144 + CCNA_00906 0.74 +1.5 987,150 - CCNA_00906 0.75 -0.7 987,152 - CCNA_00906 0.75 +0.6 987,152 - CCNA_00906 0.75 -0.8 987,157 - CCNA_00906 0.76 +1.3 987,172 - CCNA_00906 0.77 -0.8 987,231 - CCNA_00906 0.84 -0.8 987,242 + CCNA_00906 0.85 -0.1 987,247 - CCNA_00906 0.85 -0.8 987,259 + CCNA_00906 0.87 -0.4 987,259 + CCNA_00906 0.87 +0.8 987,259 + CCNA_00906 0.87 +2.1 987,267 - CCNA_00906 0.88 +0.4 987,267 - CCNA_00906 0.88 +1.5 987,267 - CCNA_00906 0.88 -2.5 987,267 - CCNA_00906 0.88 -0.1 987,282 - CCNA_00906 0.89 +1.3 987,282 - CCNA_00906 0.89 +0.4 987,282 - CCNA_00906 0.89 +0.7 987,301 + -0.1 987,305 + +0.1 987,305 + +1.5 987,305 + -0.4 987,310 + +1.5 987,313 - -0.8 987,322 + -2.4 987,330 - +0.2 987,359 + +1.3 987,372 - -0.4 987,374 + -0.3 987,405 + -0.1 987,405 + +0.6 987,405 + -0.5 987,405 + -1.5 987,413 - -0.2 987,413 - +1.1 987,472 - CCNA_00907 0.13 +0.5 987,477 - CCNA_00907 0.14 +0.2 987,518 - CCNA_00907 0.19 +0.2 987,535 - CCNA_00907 0.22 -1.0 987,549 - CCNA_00907 0.24 -0.5 987,567 - CCNA_00907 0.26 -0.5 987,567 - CCNA_00907 0.26 -2.4 987,596 + CCNA_00907 0.30 +0.4 987,604 - CCNA_00907 0.31 -0.7 987,607 + CCNA_00907 0.32 -0.3 987,616 - CCNA_00907 0.33 -1.0 987,631 - CCNA_00907 0.35 -0.0 987,660 - CCNA_00907 0.39 +0.3 987,666 - CCNA_00907 0.40 -0.7 987,806 + CCNA_00907 0.59 -0.6 987,806 + CCNA_00907 0.59 +0.7 987,806 - CCNA_00907 0.59 -0.3 987,814 - CCNA_00907 0.60 -1.4 987,814 - CCNA_00907 0.60 -0.4 987,819 - CCNA_00907 0.61 -0.3 987,823 + CCNA_00907 0.61 +0.4 987,823 + CCNA_00907 0.61 +0.1 987,823 + CCNA_00907 0.61 -0.9 987,823 + CCNA_00907 0.61 -0.1 987,830 - CCNA_00907 0.62 +0.1 987,831 - CCNA_00907 0.62 -0.4 987,853 + CCNA_00907 0.65 -0.1 987,881 - CCNA_00907 0.69 -1.4 987,886 - CCNA_00907 0.70 -0.1 987,887 - CCNA_00907 0.70 -0.1 987,887 - CCNA_00907 0.70 -0.1 987,935 - CCNA_00907 0.77 -0.3 987,935 - CCNA_00907 0.77 -0.9 987,956 + CCNA_00907 0.79 +0.1 987,956 + CCNA_00907 0.79 -0.2 987,964 - CCNA_00907 0.81 +0.1 987,964 - CCNA_00907 0.81 +1.0 988,060 - -1.2 988,060 - +1.4 988,062 + +0.0 988,070 - -0.8 988,100 + +0.6 988,105 + +0.7 988,111 + +0.1 988,120 - -0.6 988,129 - +0.8 988,129 - -0.8 988,136 + +1.3 988,144 - +0.5 988,155 + +1.1 988,165 + CCNA_00908 0.11 +0.5 988,168 - CCNA_00908 0.11 +0.7 988,170 + CCNA_00908 0.11 +0.2 988,189 - CCNA_00908 0.13 -0.5 988,198 - CCNA_00908 0.14 +0.8 988,296 + CCNA_00908 0.22 -1.1 988,304 - CCNA_00908 0.23 +0.1 988,316 + CCNA_00908 0.24 -0.7 988,322 + CCNA_00908 0.25 +0.7 988,347 + CCNA_00908 0.27 +0.9 988,355 - CCNA_00908 0.27 -0.5 988,363 + CCNA_00908 0.28 +0.6
Or see this region's nucleotide sequence