Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00779

Experiment: PYE with Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00778 and CCNA_00779 are separated by 566 nucleotidesCCNA_00779 and CCNA_00780 are separated by 13 nucleotides CCNA_00778: CCNA_00778 - GTP-binding protein TypA/BipA, at 837,946 to 839,778 _00778 CCNA_00779: CCNA_00779 - TonB superfamily protein, at 840,345 to 840,746 _00779 CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686 _00780 Position (kb) 840 841Strain fitness (log2 ratio) -2 -1 0 1 2at 839.359 kb on + strand, within CCNA_00778at 839.367 kb on - strand, within CCNA_00778at 839.434 kb on - strand, within CCNA_00778at 839.434 kb on - strand, within CCNA_00778at 839.449 kb on - strand, within CCNA_00778at 839.449 kb on - strand, within CCNA_00778at 839.449 kb on - strand, within CCNA_00778at 839.499 kb on - strand, within CCNA_00778at 839.585 kb on + strand, within CCNA_00778at 839.596 kb on - strandat 839.596 kb on - strandat 839.629 kb on - strandat 839.677 kb on - strandat 839.693 kb on + strandat 839.724 kb on - strandat 839.802 kb on + strandat 839.810 kb on - strandat 839.817 kb on - strandat 839.832 kb on - strandat 839.884 kb on - strandat 840.100 kb on - strandat 840.244 kb on + strandat 840.244 kb on + strandat 840.250 kb on - strandat 840.262 kb on + strandat 840.271 kb on + strandat 840.319 kb on - strandat 840.350 kb on - strandat 840.385 kb on + strandat 840.385 kb on + strandat 840.393 kb on - strand, within CCNA_00779at 840.393 kb on - strand, within CCNA_00779at 840.395 kb on + strand, within CCNA_00779at 840.403 kb on - strand, within CCNA_00779at 840.450 kb on + strand, within CCNA_00779at 840.452 kb on + strand, within CCNA_00779at 840.466 kb on + strand, within CCNA_00779at 840.474 kb on - strand, within CCNA_00779at 840.488 kb on + strand, within CCNA_00779at 840.515 kb on + strand, within CCNA_00779at 840.523 kb on - strand, within CCNA_00779at 840.536 kb on + strand, within CCNA_00779at 840.556 kb on + strand, within CCNA_00779at 840.600 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.601 kb on + strand, within CCNA_00779at 840.609 kb on - strand, within CCNA_00779at 840.609 kb on - strand, within CCNA_00779at 840.609 kb on - strand, within CCNA_00779at 840.616 kb on + strand, within CCNA_00779at 840.621 kb on + strand, within CCNA_00779at 840.621 kb on + strand, within CCNA_00779at 840.621 kb on + strand, within CCNA_00779at 840.629 kb on - strand, within CCNA_00779at 840.629 kb on - strand, within CCNA_00779at 840.637 kb on + strand, within CCNA_00779at 840.657 kb on + strand, within CCNA_00779at 840.670 kb on - strand, within CCNA_00779at 840.761 kb on - strandat 840.763 kb on + strandat 840.771 kb on - strandat 840.772 kb on + strandat 840.777 kb on + strandat 840.780 kb on - strandat 840.782 kb on + strandat 840.782 kb on + strandat 840.782 kb on + strandat 840.785 kb on - strandat 840.826 kb on - strandat 840.836 kb on - strandat 840.863 kb on + strand, within CCNA_00780at 840.863 kb on + strand, within CCNA_00780at 840.863 kb on + strand, within CCNA_00780at 840.869 kb on - strand, within CCNA_00780at 840.871 kb on - strand, within CCNA_00780at 840.871 kb on - strand, within CCNA_00780at 840.871 kb on - strand, within CCNA_00780at 840.874 kb on - strand, within CCNA_00780at 840.899 kb on + strand, within CCNA_00780at 840.907 kb on - strand, within CCNA_00780at 840.907 kb on - strand, within CCNA_00780at 840.907 kb on - strand, within CCNA_00780at 840.928 kb on + strand, within CCNA_00780at 840.930 kb on + strand, within CCNA_00780at 840.936 kb on - strand, within CCNA_00780at 840.936 kb on - strand, within CCNA_00780at 840.938 kb on - strand, within CCNA_00780at 840.945 kb on + strand, within CCNA_00780at 840.949 kb on + strand, within CCNA_00780at 840.957 kb on - strand, within CCNA_00780at 840.975 kb on - strand, within CCNA_00780at 840.979 kb on + strand, within CCNA_00780at 840.982 kb on - strand, within CCNA_00780at 840.995 kb on - strand, within CCNA_00780at 841.006 kb on - strand, within CCNA_00780at 841.006 kb on - strand, within CCNA_00780at 841.006 kb on - strand, within CCNA_00780at 841.056 kb on - strand, within CCNA_00780at 841.060 kb on + strand, within CCNA_00780at 841.097 kb on - strand, within CCNA_00780at 841.105 kb on + strand, within CCNA_00780at 841.139 kb on + strand, within CCNA_00780at 841.224 kb on - strand, within CCNA_00780at 841.254 kb on - strand, within CCNA_00780at 841.258 kb on - strand, within CCNA_00780at 841.261 kb on + strand, within CCNA_00780at 841.283 kb on + strand, within CCNA_00780at 841.283 kb on + strand, within CCNA_00780at 841.318 kb on + strand, within CCNA_00780at 841.318 kb on + strand, within CCNA_00780at 841.323 kb on + strand, within CCNA_00780at 841.326 kb on - strand, within CCNA_00780at 841.351 kb on - strand, within CCNA_00780at 841.351 kb on - strand, within CCNA_00780at 841.367 kb on + strand, within CCNA_00780at 841.368 kb on - strand, within CCNA_00780at 841.381 kb on + strand, within CCNA_00780at 841.381 kb on + strand, within CCNA_00780at 841.381 kb on + strand, within CCNA_00780at 841.382 kb on - strand, within CCNA_00780at 841.389 kb on - strand, within CCNA_00780at 841.389 kb on - strand, within CCNA_00780at 841.419 kb on + strand, within CCNA_00780at 841.419 kb on - strand, within CCNA_00780at 841.436 kb on - strand, within CCNA_00780at 841.480 kb on - strand, within CCNA_00780at 841.514 kb on + strand, within CCNA_00780at 841.529 kb on + strand, within CCNA_00780at 841.529 kb on + strand, within CCNA_00780at 841.561 kb on + strand, within CCNA_00780at 841.569 kb on - strand, within CCNA_00780at 841.588 kb on + strand, within CCNA_00780at 841.588 kb on + strand, within CCNA_00780at 841.588 kb on + strand, within CCNA_00780at 841.596 kb on - strandat 841.596 kb on - strandat 841.596 kb on - strandat 841.596 kb on - strandat 841.600 kb on + strandat 841.601 kb on - strandat 841.623 kb on + strandat 841.640 kb on + strandat 841.654 kb on - strandat 841.665 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml
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839,359 + CCNA_00778 0.77 +1.1
839,367 - CCNA_00778 0.78 +0.6
839,434 - CCNA_00778 0.81 -0.0
839,434 - CCNA_00778 0.81 +1.7
839,449 - CCNA_00778 0.82 -0.3
839,449 - CCNA_00778 0.82 -1.6
839,449 - CCNA_00778 0.82 -0.7
839,499 - CCNA_00778 0.85 +0.3
839,585 + CCNA_00778 0.89 +0.3
839,596 - -0.9
839,596 - +1.7
839,629 - -0.2
839,677 - +0.5
839,693 + +0.3
839,724 - +0.3
839,802 + +1.6
839,810 - -1.3
839,817 - +0.5
839,832 - +0.5
839,884 - +1.4
840,100 - -0.3
840,244 + +0.1
840,244 + +2.2
840,250 - +0.8
840,262 + -1.2
840,271 + -0.1
840,319 - -1.2
840,350 - +1.1
840,385 + -0.1
840,385 + -0.6
840,393 - CCNA_00779 0.12 -1.8
840,393 - CCNA_00779 0.12 +0.3
840,395 + CCNA_00779 0.12 -0.2
840,403 - CCNA_00779 0.14 -0.6
840,450 + CCNA_00779 0.26 +1.6
840,452 + CCNA_00779 0.27 -0.6
840,466 + CCNA_00779 0.30 -0.4
840,474 - CCNA_00779 0.32 +0.6
840,488 + CCNA_00779 0.36 +1.6
840,515 + CCNA_00779 0.42 +0.4
840,523 - CCNA_00779 0.44 +1.1
840,536 + CCNA_00779 0.48 +0.1
840,556 + CCNA_00779 0.52 +0.9
840,600 + CCNA_00779 0.63 -1.0
840,601 + CCNA_00779 0.64 -1.1
840,601 + CCNA_00779 0.64 +1.2
840,601 + CCNA_00779 0.64 +0.6
840,601 + CCNA_00779 0.64 -0.5
840,609 - CCNA_00779 0.66 +0.8
840,609 - CCNA_00779 0.66 -0.3
840,609 - CCNA_00779 0.66 -0.5
840,616 + CCNA_00779 0.67 +0.4
840,621 + CCNA_00779 0.69 +1.2
840,621 + CCNA_00779 0.69 +0.8
840,621 + CCNA_00779 0.69 +0.7
840,629 - CCNA_00779 0.71 +2.1
840,629 - CCNA_00779 0.71 -1.4
840,637 + CCNA_00779 0.73 -0.5
840,657 + CCNA_00779 0.78 +0.3
840,670 - CCNA_00779 0.81 +0.5
840,761 - -1.8
840,763 + +0.4
840,771 - +0.2
840,772 + -0.8
840,777 + -0.1
840,780 - -0.2
840,782 + +0.4
840,782 + +0.9
840,782 + +1.6
840,785 - +0.3
840,826 - -0.0
840,836 - +0.6
840,863 + CCNA_00780 0.11 +0.1
840,863 + CCNA_00780 0.11 +0.5
840,863 + CCNA_00780 0.11 -1.0
840,869 - CCNA_00780 0.12 +0.1
840,871 - CCNA_00780 0.12 +0.1
840,871 - CCNA_00780 0.12 +0.2
840,871 - CCNA_00780 0.12 +0.4
840,874 - CCNA_00780 0.12 +0.5
840,899 + CCNA_00780 0.15 +2.6
840,907 - CCNA_00780 0.16 +0.3
840,907 - CCNA_00780 0.16 -0.4
840,907 - CCNA_00780 0.16 -0.2
840,928 + CCNA_00780 0.18 +0.4
840,930 + CCNA_00780 0.18 +1.0
840,936 - CCNA_00780 0.19 -0.4
840,936 - CCNA_00780 0.19 +0.6
840,938 - CCNA_00780 0.19 +1.1
840,945 + CCNA_00780 0.20 -0.2
840,949 + CCNA_00780 0.20 -0.4
840,957 - CCNA_00780 0.21 -2.0
840,975 - CCNA_00780 0.23 +0.1
840,979 + CCNA_00780 0.24 -0.2
840,982 - CCNA_00780 0.24 +0.1
840,995 - CCNA_00780 0.25 +0.2
841,006 - CCNA_00780 0.27 +1.9
841,006 - CCNA_00780 0.27 +0.6
841,006 - CCNA_00780 0.27 -0.3
841,056 - CCNA_00780 0.32 -0.9
841,060 + CCNA_00780 0.32 +1.9
841,097 - CCNA_00780 0.36 +0.3
841,105 + CCNA_00780 0.37 -0.2
841,139 + CCNA_00780 0.41 +0.6
841,224 - CCNA_00780 0.50 -0.4
841,254 - CCNA_00780 0.53 +0.4
841,258 - CCNA_00780 0.54 -1.1
841,261 + CCNA_00780 0.54 -0.6
841,283 + CCNA_00780 0.56 +1.4
841,283 + CCNA_00780 0.56 +2.3
841,318 + CCNA_00780 0.60 +1.1
841,318 + CCNA_00780 0.60 +0.4
841,323 + CCNA_00780 0.61 +0.3
841,326 - CCNA_00780 0.61 -0.8
841,351 - CCNA_00780 0.64 +0.0
841,351 - CCNA_00780 0.64 +0.3
841,367 + CCNA_00780 0.65 -1.1
841,368 - CCNA_00780 0.66 -0.7
841,381 + CCNA_00780 0.67 -0.4
841,381 + CCNA_00780 0.67 -1.1
841,381 + CCNA_00780 0.67 -1.6
841,382 - CCNA_00780 0.67 -0.7
841,389 - CCNA_00780 0.68 +1.1
841,389 - CCNA_00780 0.68 +0.4
841,419 + CCNA_00780 0.71 -0.2
841,419 - CCNA_00780 0.71 -0.2
841,436 - CCNA_00780 0.73 -0.3
841,480 - CCNA_00780 0.78 +1.0
841,514 + CCNA_00780 0.81 -0.7
841,529 + CCNA_00780 0.83 -1.2
841,529 + CCNA_00780 0.83 +1.2
841,561 + CCNA_00780 0.86 +1.1
841,569 - CCNA_00780 0.87 -0.7
841,588 + CCNA_00780 0.89 -1.0
841,588 + CCNA_00780 0.89 -1.2
841,588 + CCNA_00780 0.89 -0.7
841,596 - +0.7
841,596 - +0.2
841,596 - +1.2
841,596 - -0.6
841,600 + +1.0
841,601 - +0.0
841,623 + +0.9
841,640 + -0.5
841,654 - +1.1
841,665 + +0.3

Or see this region's nucleotide sequence