Experiment: PYE with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00332 and CCNA_00333 are separated by 20 nucleotides CCNA_00333 and CCNA_00334 are separated by 62 nucleotides CCNA_00334 and CCNA_00335 are separated by 37 nucleotides CCNA_00335 and CCNA_00336 are separated by 10 nucleotides
CCNA_00332: CCNA_00332 - molybdenum transport system permease protein modB, at 343,435 to 344,109
_00332
CCNA_00333: CCNA_00333 - LytTr DNA-binding domain protein, at 344,130 to 344,957
_00333
CCNA_00334: CCNA_00334 - hypothetical protein, at 345,020 to 345,580
_00334
CCNA_00335: CCNA_00335 - putative secreted protein, at 345,618 to 346,055
_00335
CCNA_00336: CCNA_00336 - lignostilbene-alpha,beta-dioxygenase, at 346,066 to 347,517
_00336
Position (kb) 345
346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.032 kb on + strand, within CCNA_00332 at 344.034 kb on - strand, within CCNA_00332 at 344.074 kb on - strand at 344.148 kb on + strand at 344.163 kb on - strand at 344.172 kb on + strand at 344.189 kb on - strand at 344.202 kb on - strand at 344.210 kb on - strand at 344.250 kb on + strand, within CCNA_00333 at 344.260 kb on + strand, within CCNA_00333 at 344.301 kb on - strand at 344.344 kb on - strand, within CCNA_00333 at 344.361 kb on - strand, within CCNA_00333 at 344.363 kb on - strand, within CCNA_00333 at 344.366 kb on + strand, within CCNA_00333 at 344.373 kb on + strand, within CCNA_00333 at 344.374 kb on - strand, within CCNA_00333 at 344.394 kb on + strand, within CCNA_00333 at 344.454 kb on + strand, within CCNA_00333 at 344.472 kb on - strand, within CCNA_00333 at 344.472 kb on - strand, within CCNA_00333 at 344.497 kb on - strand, within CCNA_00333 at 344.507 kb on - strand, within CCNA_00333 at 344.539 kb on + strand, within CCNA_00333 at 344.545 kb on - strand, within CCNA_00333 at 344.599 kb on + strand, within CCNA_00333 at 344.627 kb on - strand, within CCNA_00333 at 344.627 kb on - strand, within CCNA_00333 at 344.633 kb on - strand, within CCNA_00333 at 344.650 kb on + strand, within CCNA_00333 at 344.650 kb on + strand, within CCNA_00333 at 344.656 kb on + strand, within CCNA_00333 at 344.656 kb on + strand, within CCNA_00333 at 344.658 kb on - strand, within CCNA_00333 at 344.664 kb on - strand, within CCNA_00333 at 344.664 kb on - strand, within CCNA_00333 at 344.664 kb on - strand, within CCNA_00333 at 344.674 kb on + strand, within CCNA_00333 at 344.708 kb on - strand, within CCNA_00333 at 344.738 kb on + strand, within CCNA_00333 at 344.746 kb on + strand, within CCNA_00333 at 344.746 kb on - strand, within CCNA_00333 at 344.791 kb on + strand, within CCNA_00333 at 344.838 kb on + strand, within CCNA_00333 at 344.838 kb on + strand, within CCNA_00333 at 344.838 kb on + strand, within CCNA_00333 at 344.859 kb on + strand, within CCNA_00333 at 344.859 kb on + strand, within CCNA_00333 at 344.955 kb on - strand at 344.955 kb on - strand at 344.967 kb on - strand at 344.968 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.069 kb on - strand at 345.081 kb on - strand, within CCNA_00334 at 345.081 kb on - strand at 345.186 kb on + strand, within CCNA_00334 at 345.202 kb on + strand, within CCNA_00334 at 345.223 kb on + strand, within CCNA_00334 at 345.223 kb on + strand, within CCNA_00334 at 345.231 kb on - strand, within CCNA_00334 at 345.240 kb on + strand, within CCNA_00334 at 345.240 kb on + strand, within CCNA_00334 at 345.245 kb on + strand, within CCNA_00334 at 345.253 kb on - strand, within CCNA_00334 at 345.254 kb on + strand, within CCNA_00334 at 345.260 kb on - strand, within CCNA_00334 at 345.267 kb on + strand, within CCNA_00334 at 345.280 kb on - strand, within CCNA_00334 at 345.292 kb on + strand, within CCNA_00334 at 345.299 kb on + strand, within CCNA_00334 at 345.299 kb on + strand, within CCNA_00334 at 345.299 kb on + strand, within CCNA_00334 at 345.300 kb on - strand, within CCNA_00334 at 345.302 kb on - strand, within CCNA_00334 at 345.307 kb on - strand, within CCNA_00334 at 345.312 kb on - strand, within CCNA_00334 at 345.317 kb on + strand, within CCNA_00334 at 345.334 kb on + strand, within CCNA_00334 at 345.364 kb on + strand, within CCNA_00334 at 345.370 kb on - strand, within CCNA_00334 at 345.396 kb on + strand, within CCNA_00334 at 345.416 kb on + strand, within CCNA_00334 at 345.446 kb on + strand, within CCNA_00334 at 345.454 kb on - strand, within CCNA_00334 at 345.469 kb on + strand, within CCNA_00334 at 345.477 kb on - strand, within CCNA_00334 at 345.481 kb on + strand, within CCNA_00334 at 345.487 kb on + strand, within CCNA_00334 at 345.496 kb on - strand, within CCNA_00334 at 345.496 kb on - strand, within CCNA_00334 at 345.496 kb on - strand, within CCNA_00334 at 345.496 kb on - strand, within CCNA_00334 at 345.496 kb on - strand, within CCNA_00334 at 345.517 kb on + strand, within CCNA_00334 at 345.530 kb on + strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.564 kb on - strand at 345.569 kb on + strand at 345.577 kb on - strand at 345.577 kb on - strand at 345.580 kb on + strand at 345.581 kb on + strand at 345.581 kb on + strand at 345.581 kb on + strand at 345.588 kb on - strand at 345.589 kb on - strand at 345.589 kb on - strand at 345.589 kb on - strand at 345.624 kb on - strand at 345.639 kb on + strand at 345.648 kb on - strand at 345.648 kb on - strand at 345.708 kb on + strand, within CCNA_00335 at 345.715 kb on - strand, within CCNA_00335 at 345.716 kb on - strand, within CCNA_00335 at 345.718 kb on + strand, within CCNA_00335 at 345.725 kb on + strand, within CCNA_00335 at 345.725 kb on + strand, within CCNA_00335 at 345.731 kb on + strand, within CCNA_00335 at 345.733 kb on - strand, within CCNA_00335 at 345.733 kb on - strand, within CCNA_00335 at 345.733 kb on - strand, within CCNA_00335 at 345.744 kb on - strand, within CCNA_00335 at 345.759 kb on + strand, within CCNA_00335 at 345.776 kb on + strand, within CCNA_00335 at 345.778 kb on + strand, within CCNA_00335 at 345.784 kb on - strand, within CCNA_00335 at 345.784 kb on - strand, within CCNA_00335 at 345.814 kb on - strand, within CCNA_00335 at 345.820 kb on - strand, within CCNA_00335 at 345.855 kb on - strand, within CCNA_00335 at 345.866 kb on + strand, within CCNA_00335 at 345.874 kb on - strand, within CCNA_00335 at 345.876 kb on + strand, within CCNA_00335 at 345.924 kb on + strand, within CCNA_00335 at 345.924 kb on + strand, within CCNA_00335 at 345.952 kb on - strand, within CCNA_00335 at 345.952 kb on - strand, within CCNA_00335 at 346.039 kb on + strand at 346.040 kb on - strand at 346.063 kb on + strand at 346.063 kb on + strand at 346.064 kb on + strand at 346.071 kb on - strand at 346.096 kb on + strand at 346.096 kb on + strand at 346.096 kb on + strand at 346.099 kb on - strand at 346.104 kb on - strand at 346.104 kb on - strand at 346.104 kb on - strand at 346.104 kb on - strand at 346.104 kb on - strand at 346.134 kb on + strand at 346.142 kb on - strand at 346.195 kb on + strand at 346.245 kb on - strand, within CCNA_00336 at 346.254 kb on + strand, within CCNA_00336 at 346.254 kb on + strand, within CCNA_00336 at 346.302 kb on - strand, within CCNA_00336 at 346.327 kb on + strand, within CCNA_00336 at 346.364 kb on - strand, within CCNA_00336 at 346.393 kb on - strand, within CCNA_00336 at 346.401 kb on + strand, within CCNA_00336 at 346.427 kb on + strand, within CCNA_00336 at 346.435 kb on - strand, within CCNA_00336 at 346.453 kb on - strand, within CCNA_00336 at 346.453 kb on - strand, within CCNA_00336 at 346.460 kb on - strand, within CCNA_00336 at 346.462 kb on + strand, within CCNA_00336 at 346.470 kb on - strand, within CCNA_00336 at 346.524 kb on + strand, within CCNA_00336 at 346.524 kb on + strand, within CCNA_00336 at 346.524 kb on + strand, within CCNA_00336 at 346.524 kb on + strand, within CCNA_00336 at 346.524 kb on + strand, within CCNA_00336 at 346.544 kb on - strand, within CCNA_00336
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml remove 344,032 + CCNA_00332 0.88 +0.3 344,034 - CCNA_00332 0.89 +0.0 344,074 - +0.0 344,148 + -1.3 344,163 - +0.9 344,172 + +0.0 344,189 - -0.4 344,202 - -2.2 344,210 - -1.4 344,250 + CCNA_00333 0.14 -1.5 344,260 + CCNA_00333 0.16 +0.3 344,301 - +2.2 344,344 - CCNA_00333 0.26 -0.6 344,361 - CCNA_00333 0.28 -1.4 344,363 - CCNA_00333 0.28 -1.6 344,366 + CCNA_00333 0.29 -1.7 344,373 + CCNA_00333 0.29 -1.1 344,374 - CCNA_00333 0.29 -0.9 344,394 + CCNA_00333 0.32 +0.6 344,454 + CCNA_00333 0.39 +2.0 344,472 - CCNA_00333 0.41 +0.3 344,472 - CCNA_00333 0.41 +0.9 344,497 - CCNA_00333 0.44 -0.6 344,507 - CCNA_00333 0.46 -1.5 344,539 + CCNA_00333 0.49 -0.9 344,545 - CCNA_00333 0.50 +0.5 344,599 + CCNA_00333 0.57 -1.2 344,627 - CCNA_00333 0.60 +0.7 344,627 - CCNA_00333 0.60 +0.7 344,633 - CCNA_00333 0.61 -0.2 344,650 + CCNA_00333 0.63 -0.7 344,650 + CCNA_00333 0.63 -1.6 344,656 + CCNA_00333 0.64 -1.9 344,656 + CCNA_00333 0.64 +0.6 344,658 - CCNA_00333 0.64 +1.2 344,664 - CCNA_00333 0.64 +1.2 344,664 - CCNA_00333 0.64 -0.6 344,664 - CCNA_00333 0.64 +0.9 344,674 + CCNA_00333 0.66 -0.4 344,708 - CCNA_00333 0.70 -0.6 344,738 + CCNA_00333 0.73 +1.5 344,746 + CCNA_00333 0.74 +0.0 344,746 - CCNA_00333 0.74 +0.3 344,791 + CCNA_00333 0.80 -1.5 344,838 + CCNA_00333 0.86 -1.3 344,838 + CCNA_00333 0.86 -1.0 344,838 + CCNA_00333 0.86 -0.3 344,859 + CCNA_00333 0.88 +0.3 344,859 + CCNA_00333 0.88 -0.6 344,955 - -0.0 344,955 - +0.5 344,967 - -0.7 344,968 - +1.8 345,010 - -1.3 345,010 - +0.9 345,010 - -1.4 345,069 - -0.8 345,081 - CCNA_00334 0.11 -0.4 345,081 - +2.4 345,186 + CCNA_00334 0.30 +2.4 345,202 + CCNA_00334 0.32 +1.9 345,223 + CCNA_00334 0.36 -1.6 345,223 + CCNA_00334 0.36 +0.1 345,231 - CCNA_00334 0.38 -1.8 345,240 + CCNA_00334 0.39 -0.2 345,240 + CCNA_00334 0.39 +0.6 345,245 + CCNA_00334 0.40 +0.7 345,253 - CCNA_00334 0.42 -1.0 345,254 + CCNA_00334 0.42 +1.0 345,260 - CCNA_00334 0.43 +0.1 345,267 + CCNA_00334 0.44 +0.2 345,280 - CCNA_00334 0.46 +0.2 345,292 + CCNA_00334 0.48 -0.1 345,299 + CCNA_00334 0.50 -0.1 345,299 + CCNA_00334 0.50 +1.0 345,299 + CCNA_00334 0.50 +1.0 345,300 - CCNA_00334 0.50 -0.6 345,302 - CCNA_00334 0.50 +0.4 345,307 - CCNA_00334 0.51 +0.1 345,312 - CCNA_00334 0.52 -1.0 345,317 + CCNA_00334 0.53 +1.2 345,334 + CCNA_00334 0.56 +1.3 345,364 + CCNA_00334 0.61 -0.4 345,370 - CCNA_00334 0.62 -0.8 345,396 + CCNA_00334 0.67 -0.1 345,416 + CCNA_00334 0.71 -2.2 345,446 + CCNA_00334 0.76 -0.7 345,454 - CCNA_00334 0.77 +0.2 345,469 + CCNA_00334 0.80 -1.0 345,477 - CCNA_00334 0.81 -0.5 345,481 + CCNA_00334 0.82 -0.2 345,487 + CCNA_00334 0.83 -0.1 345,496 - CCNA_00334 0.85 +2.0 345,496 - CCNA_00334 0.85 -0.1 345,496 - CCNA_00334 0.85 +1.6 345,496 - CCNA_00334 0.85 +0.3 345,496 - CCNA_00334 0.85 -0.4 345,517 + CCNA_00334 0.89 -0.7 345,530 + +0.2 345,556 + -0.1 345,556 + +1.7 345,556 + +0.6 345,556 + -0.4 345,564 - -0.4 345,569 + +0.5 345,577 - -0.1 345,577 - +2.0 345,580 + -1.7 345,581 + +0.9 345,581 + -0.6 345,581 + -0.1 345,588 - -1.8 345,589 - +0.2 345,589 - +2.3 345,589 - -0.2 345,624 - -1.3 345,639 + +2.0 345,648 - -0.7 345,648 - +0.3 345,708 + CCNA_00335 0.21 -0.6 345,715 - CCNA_00335 0.22 -0.1 345,716 - CCNA_00335 0.22 +0.9 345,718 + CCNA_00335 0.23 -0.4 345,725 + CCNA_00335 0.24 -0.3 345,725 + CCNA_00335 0.24 +0.9 345,731 + CCNA_00335 0.26 -1.0 345,733 - CCNA_00335 0.26 +1.4 345,733 - CCNA_00335 0.26 +0.1 345,733 - CCNA_00335 0.26 +1.0 345,744 - CCNA_00335 0.29 -1.2 345,759 + CCNA_00335 0.32 -1.8 345,776 + CCNA_00335 0.36 -2.5 345,778 + CCNA_00335 0.37 -0.7 345,784 - CCNA_00335 0.38 -0.2 345,784 - CCNA_00335 0.38 +0.4 345,814 - CCNA_00335 0.45 -0.9 345,820 - CCNA_00335 0.46 -0.4 345,855 - CCNA_00335 0.54 +1.4 345,866 + CCNA_00335 0.57 +1.2 345,874 - CCNA_00335 0.58 -0.5 345,876 + CCNA_00335 0.59 +0.3 345,924 + CCNA_00335 0.70 +1.1 345,924 + CCNA_00335 0.70 +0.0 345,952 - CCNA_00335 0.76 +0.9 345,952 - CCNA_00335 0.76 -1.4 346,039 + -0.6 346,040 - +0.0 346,063 + +0.7 346,063 + +0.6 346,064 + +0.1 346,071 - -0.3 346,096 + -1.6 346,096 + +0.7 346,096 + -2.3 346,099 - +1.5 346,104 - +0.3 346,104 - -0.2 346,104 - -0.3 346,104 - -1.3 346,104 - -1.1 346,134 + +0.0 346,142 - -0.3 346,195 + -2.3 346,245 - CCNA_00336 0.12 -0.6 346,254 + CCNA_00336 0.13 -0.1 346,254 + CCNA_00336 0.13 +1.0 346,302 - CCNA_00336 0.16 +0.1 346,327 + CCNA_00336 0.18 -1.4 346,364 - CCNA_00336 0.21 -0.1 346,393 - CCNA_00336 0.23 +0.5 346,401 + CCNA_00336 0.23 -0.5 346,427 + CCNA_00336 0.25 -2.0 346,435 - CCNA_00336 0.25 -0.4 346,453 - CCNA_00336 0.27 -0.7 346,453 - CCNA_00336 0.27 -0.6 346,460 - CCNA_00336 0.27 +1.7 346,462 + CCNA_00336 0.27 -0.8 346,470 - CCNA_00336 0.28 +0.7 346,524 + CCNA_00336 0.32 -0.1 346,524 + CCNA_00336 0.32 +0.0 346,524 + CCNA_00336 0.32 -0.9 346,524 + CCNA_00336 0.32 -0.1 346,524 + CCNA_00336 0.32 +0.2 346,544 - CCNA_00336 0.33 +0.4
Or see this region's nucleotide sequence