Experiment: PYE with Thallium(I) acetate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00010 and CCNA_00011 are separated by 162 nucleotides CCNA_00011 and CCNA_00012 are separated by 86 nucleotides
CCNA_00010: CCNA_00010 - chaperone protein DnaK, at 8,165 to 10,060
_00010
CCNA_00011: CCNA_00011 - chaperone protein DnaJ, at 10,223 to 11,380
_00011
CCNA_00012: CCNA_00012 - DNA mismatch repair protein MutS, at 11,467 to 14,178
_00012
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 9.904 kb on + strand at 9.928 kb on + strand at 10.006 kb on - strand at 10.054 kb on + strand at 10.115 kb on + strand at 10.145 kb on + strand at 10.152 kb on + strand at 10.157 kb on + strand at 10.759 kb on - strand, within CCNA_00011 at 10.963 kb on + strand, within CCNA_00011 at 11.012 kb on + strand, within CCNA_00011 at 11.057 kb on + strand, within CCNA_00011 at 11.096 kb on + strand, within CCNA_00011 at 11.155 kb on + strand, within CCNA_00011 at 11.184 kb on - strand, within CCNA_00011 at 11.190 kb on - strand, within CCNA_00011 at 11.247 kb on + strand, within CCNA_00011 at 11.273 kb on + strand at 11.317 kb on + strand at 11.317 kb on - strand at 11.325 kb on - strand at 11.344 kb on + strand at 11.361 kb on - strand at 11.366 kb on + strand at 11.372 kb on - strand at 11.382 kb on - strand at 11.383 kb on - strand at 11.446 kb on + strand at 11.497 kb on - strand at 11.646 kb on - strand at 11.716 kb on + strand at 11.751 kb on + strand, within CCNA_00012 at 11.775 kb on + strand, within CCNA_00012 at 11.807 kb on + strand, within CCNA_00012 at 11.807 kb on + strand, within CCNA_00012 at 11.813 kb on + strand, within CCNA_00012 at 11.815 kb on - strand, within CCNA_00012 at 11.934 kb on - strand, within CCNA_00012 at 11.955 kb on + strand, within CCNA_00012 at 11.967 kb on + strand, within CCNA_00012 at 11.976 kb on - strand, within CCNA_00012 at 11.991 kb on + strand, within CCNA_00012 at 11.999 kb on - strand, within CCNA_00012 at 12.002 kb on + strand, within CCNA_00012 at 12.024 kb on - strand, within CCNA_00012 at 12.027 kb on + strand, within CCNA_00012 at 12.029 kb on + strand, within CCNA_00012 at 12.035 kb on - strand, within CCNA_00012 at 12.081 kb on - strand, within CCNA_00012 at 12.082 kb on + strand, within CCNA_00012 at 12.082 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.108 kb on + strand, within CCNA_00012 at 12.111 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.121 kb on + strand, within CCNA_00012 at 12.123 kb on - strand, within CCNA_00012 at 12.126 kb on + strand, within CCNA_00012 at 12.134 kb on - strand, within CCNA_00012 at 12.150 kb on - strand, within CCNA_00012 at 12.162 kb on + strand, within CCNA_00012 at 12.170 kb on - strand, within CCNA_00012 at 12.170 kb on - strand, within CCNA_00012 at 12.172 kb on + strand, within CCNA_00012 at 12.172 kb on + strand, within CCNA_00012 at 12.178 kb on + strand, within CCNA_00012 at 12.205 kb on - strand, within CCNA_00012 at 12.221 kb on + strand, within CCNA_00012 at 12.316 kb on - strand, within CCNA_00012 at 12.349 kb on - strand, within CCNA_00012
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.004 mg/ml remove 9,904 + +3.2 9,928 + +4.6 10,006 - +1.7 10,054 + +0.1 10,115 + -0.7 10,145 + +1.5 10,152 + +0.6 10,157 + -0.6 10,759 - CCNA_00011 0.46 +6.8 10,963 + CCNA_00011 0.64 +8.3 11,012 + CCNA_00011 0.68 +7.8 11,057 + CCNA_00011 0.72 +6.1 11,096 + CCNA_00011 0.75 +6.1 11,155 + CCNA_00011 0.80 +8.4 11,184 - CCNA_00011 0.83 +7.7 11,190 - CCNA_00011 0.84 +7.9 11,247 + CCNA_00011 0.88 +5.4 11,273 + +7.9 11,317 + +1.2 11,317 - +2.5 11,325 - +3.1 11,344 + +1.5 11,361 - -1.5 11,366 + +1.2 11,372 - -0.6 11,382 - +1.2 11,383 - +0.0 11,446 + -1.2 11,497 - -0.4 11,646 - -1.6 11,716 + -0.9 11,751 + CCNA_00012 0.10 -0.8 11,775 + CCNA_00012 0.11 +0.0 11,807 + CCNA_00012 0.13 -0.2 11,807 + CCNA_00012 0.13 +0.1 11,813 + CCNA_00012 0.13 -0.3 11,815 - CCNA_00012 0.13 +1.7 11,934 - CCNA_00012 0.17 +0.5 11,955 + CCNA_00012 0.18 -0.4 11,967 + CCNA_00012 0.18 -0.1 11,976 - CCNA_00012 0.19 -0.7 11,991 + CCNA_00012 0.19 +0.5 11,999 - CCNA_00012 0.20 -1.0 12,002 + CCNA_00012 0.20 -2.3 12,024 - CCNA_00012 0.21 +1.7 12,027 + CCNA_00012 0.21 -0.1 12,029 + CCNA_00012 0.21 +0.2 12,035 - CCNA_00012 0.21 +2.1 12,081 - CCNA_00012 0.23 -0.5 12,082 + CCNA_00012 0.23 -1.0 12,082 + CCNA_00012 0.23 -0.2 12,098 + CCNA_00012 0.23 -0.9 12,098 + CCNA_00012 0.23 -1.0 12,098 + CCNA_00012 0.23 +0.0 12,108 + CCNA_00012 0.24 -0.1 12,111 - CCNA_00012 0.24 -0.2 12,116 - CCNA_00012 0.24 -2.7 12,116 - CCNA_00012 0.24 +0.4 12,116 - CCNA_00012 0.24 +0.9 12,116 - CCNA_00012 0.24 +1.9 12,121 + CCNA_00012 0.24 -0.1 12,123 - CCNA_00012 0.24 -2.0 12,126 + CCNA_00012 0.24 +1.7 12,134 - CCNA_00012 0.25 -0.1 12,150 - CCNA_00012 0.25 +2.0 12,162 + CCNA_00012 0.26 -1.3 12,170 - CCNA_00012 0.26 +0.4 12,170 - CCNA_00012 0.26 -0.6 12,172 + CCNA_00012 0.26 +0.8 12,172 + CCNA_00012 0.26 +0.4 12,178 + CCNA_00012 0.26 +0.9 12,205 - CCNA_00012 0.27 -0.7 12,221 + CCNA_00012 0.28 -0.7 12,316 - CCNA_00012 0.31 -1.9 12,349 - CCNA_00012 0.33 -0.6
Or see this region's nucleotide sequence