Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18555

Experiment: soil sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18550 and ABZR87_RS18555 are separated by 100 nucleotidesABZR87_RS18555 and ABZR87_RS18560 are separated by 95 nucleotides ABZR87_RS18550: ABZR87_RS18550 - alkane 1-monooxygenase, at 517,000 to 518,163 _RS18550 ABZR87_RS18555: ABZR87_RS18555 - AraC family transcriptional regulator, at 518,264 to 519,163 _RS18555 ABZR87_RS18560: ABZR87_RS18560 - NmrA family NAD(P)-binding protein, at 519,259 to 520,149 _RS18560 Position (kb) 518 519 520Strain fitness (log2 ratio) -2 -1 0 1 2 3at 517.268 kb on - strand, within ABZR87_RS18550at 517.268 kb on - strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.327 kb on + strand, within ABZR87_RS18550at 517.328 kb on - strand, within ABZR87_RS18550at 517.343 kb on - strand, within ABZR87_RS18550at 517.348 kb on + strand, within ABZR87_RS18550at 517.348 kb on + strand, within ABZR87_RS18550at 517.348 kb on + strand, within ABZR87_RS18550at 517.349 kb on - strand, within ABZR87_RS18550at 517.399 kb on - strand, within ABZR87_RS18550at 517.474 kb on + strand, within ABZR87_RS18550at 517.475 kb on - strand, within ABZR87_RS18550at 517.475 kb on - strand, within ABZR87_RS18550at 517.475 kb on - strand, within ABZR87_RS18550at 517.553 kb on - strand, within ABZR87_RS18550at 517.771 kb on + strand, within ABZR87_RS18550at 517.772 kb on - strand, within ABZR87_RS18550at 517.772 kb on - strand, within ABZR87_RS18550at 517.772 kb on - strand, within ABZR87_RS18550at 517.772 kb on - strand, within ABZR87_RS18550at 517.801 kb on + strand, within ABZR87_RS18550at 517.801 kb on + strand, within ABZR87_RS18550at 517.802 kb on - strand, within ABZR87_RS18550at 517.802 kb on - strand, within ABZR87_RS18550at 517.802 kb on - strand, within ABZR87_RS18550at 517.802 kb on - strand, within ABZR87_RS18550at 517.812 kb on + strand, within ABZR87_RS18550at 517.814 kb on - strand, within ABZR87_RS18550at 517.912 kb on + strand, within ABZR87_RS18550at 517.912 kb on + strand, within ABZR87_RS18550at 518.009 kb on - strand, within ABZR87_RS18550at 518.032 kb on + strand, within ABZR87_RS18550at 518.032 kb on + strand, within ABZR87_RS18550at 518.032 kb on + strand, within ABZR87_RS18550at 518.032 kb on + strand, within ABZR87_RS18550at 518.033 kb on - strand, within ABZR87_RS18550at 518.033 kb on - strand, within ABZR87_RS18550at 518.083 kb on + strandat 518.083 kb on + strandat 518.084 kb on - strandat 518.084 kb on - strandat 518.084 kb on - strandat 518.146 kb on + strandat 518.147 kb on - strandat 518.382 kb on - strand, within ABZR87_RS18555at 518.451 kb on + strand, within ABZR87_RS18555at 518.583 kb on + strand, within ABZR87_RS18555at 518.583 kb on + strand, within ABZR87_RS18555at 518.717 kb on + strand, within ABZR87_RS18555at 518.718 kb on - strand, within ABZR87_RS18555at 518.718 kb on - strand, within ABZR87_RS18555at 518.841 kb on - strand, within ABZR87_RS18555at 518.960 kb on + strand, within ABZR87_RS18555at 518.960 kb on + strand, within ABZR87_RS18555at 518.961 kb on - strand, within ABZR87_RS18555at 518.961 kb on - strand, within ABZR87_RS18555at 518.961 kb on - strand, within ABZR87_RS18555at 519.161 kb on + strandat 519.950 kb on + strand, within ABZR87_RS18560at 520.027 kb on + strand, within ABZR87_RS18560at 520.028 kb on - strand, within ABZR87_RS18560

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB
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517,268 - ABZR87_RS18550 0.23 +3.2
517,268 - ABZR87_RS18550 0.23 +0.5
517,327 + ABZR87_RS18550 0.28 -0.3
517,327 + ABZR87_RS18550 0.28 -0.2
517,327 + ABZR87_RS18550 0.28 -0.4
517,327 + ABZR87_RS18550 0.28 +0.7
517,327 + ABZR87_RS18550 0.28 -0.1
517,328 - ABZR87_RS18550 0.28 +0.4
517,343 - ABZR87_RS18550 0.29 +0.5
517,348 + ABZR87_RS18550 0.30 -1.0
517,348 + ABZR87_RS18550 0.30 +0.4
517,348 + ABZR87_RS18550 0.30 -0.3
517,349 - ABZR87_RS18550 0.30 +0.4
517,399 - ABZR87_RS18550 0.34 +0.5
517,474 + ABZR87_RS18550 0.41 +0.6
517,475 - ABZR87_RS18550 0.41 -0.9
517,475 - ABZR87_RS18550 0.41 +0.1
517,475 - ABZR87_RS18550 0.41 -0.7
517,553 - ABZR87_RS18550 0.48 +1.2
517,771 + ABZR87_RS18550 0.66 -0.0
517,772 - ABZR87_RS18550 0.66 +0.6
517,772 - ABZR87_RS18550 0.66 +0.8
517,772 - ABZR87_RS18550 0.66 -0.5
517,772 - ABZR87_RS18550 0.66 +0.1
517,801 + ABZR87_RS18550 0.69 -0.8
517,801 + ABZR87_RS18550 0.69 +0.5
517,802 - ABZR87_RS18550 0.69 +0.2
517,802 - ABZR87_RS18550 0.69 -1.3
517,802 - ABZR87_RS18550 0.69 -0.1
517,802 - ABZR87_RS18550 0.69 -0.8
517,812 + ABZR87_RS18550 0.70 -0.4
517,814 - ABZR87_RS18550 0.70 +0.1
517,912 + ABZR87_RS18550 0.78 -0.1
517,912 + ABZR87_RS18550 0.78 -0.0
518,009 - ABZR87_RS18550 0.87 +0.3
518,032 + ABZR87_RS18550 0.89 +0.7
518,032 + ABZR87_RS18550 0.89 +0.6
518,032 + ABZR87_RS18550 0.89 -0.6
518,032 + ABZR87_RS18550 0.89 +0.7
518,033 - ABZR87_RS18550 0.89 +0.0
518,033 - ABZR87_RS18550 0.89 -0.4
518,083 + +0.1
518,083 + -0.0
518,084 - +0.3
518,084 - +0.8
518,084 - -2.3
518,146 + -0.2
518,147 - +0.6
518,382 - ABZR87_RS18555 0.13 +1.0
518,451 + ABZR87_RS18555 0.21 -0.8
518,583 + ABZR87_RS18555 0.35 -0.9
518,583 + ABZR87_RS18555 0.35 -1.5
518,717 + ABZR87_RS18555 0.50 +0.5
518,718 - ABZR87_RS18555 0.50 -0.3
518,718 - ABZR87_RS18555 0.50 -0.0
518,841 - ABZR87_RS18555 0.64 -0.4
518,960 + ABZR87_RS18555 0.77 -1.1
518,960 + ABZR87_RS18555 0.77 -0.4
518,961 - ABZR87_RS18555 0.77 -0.2
518,961 - ABZR87_RS18555 0.77 -0.3
518,961 - ABZR87_RS18555 0.77 -1.8
519,161 + -0.7
519,950 + ABZR87_RS18560 0.78 -0.6
520,027 + ABZR87_RS18560 0.86 -0.8
520,028 - ABZR87_RS18560 0.86 -0.1

Or see this region's nucleotide sequence