Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17250

Experiment: soil sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17245 and ABZR87_RS17250 are separated by 95 nucleotidesABZR87_RS17250 and ABZR87_RS17255 overlap by 22 nucleotides ABZR87_RS17245: ABZR87_RS17245 - LysR substrate-binding domain-containing protein, at 227,337 to 228,224 _RS17245 ABZR87_RS17250: ABZR87_RS17250 - nucleoside deaminase, at 228,320 to 228,775 _RS17250 ABZR87_RS17255: ABZR87_RS17255 - CynX/NimT family MFS transporter, at 228,754 to 230,007 _RS17255 Position (kb) 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 227.587 kb on + strand, within ABZR87_RS17245at 227.587 kb on + strand, within ABZR87_RS17245at 227.588 kb on - strand, within ABZR87_RS17245at 227.588 kb on - strand, within ABZR87_RS17245at 227.644 kb on + strand, within ABZR87_RS17245at 227.821 kb on + strand, within ABZR87_RS17245at 227.821 kb on + strand, within ABZR87_RS17245at 228.285 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.335 kb on + strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.336 kb on - strandat 228.517 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.545 kb on + strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.546 kb on - strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.611 kb on + strand, within ABZR87_RS17250at 228.612 kb on - strand, within ABZR87_RS17250at 228.620 kb on + strand, within ABZR87_RS17250at 228.623 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.668 kb on + strand, within ABZR87_RS17250at 228.669 kb on - strand, within ABZR87_RS17250at 228.746 kb on + strandat 228.747 kb on - strandat 228.747 kb on - strandat 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.240 kb on + strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.241 kb on - strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.296 kb on + strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.297 kb on - strand, within ABZR87_RS17255at 229.462 kb on + strand, within ABZR87_RS17255at 229.462 kb on + strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.463 kb on - strand, within ABZR87_RS17255at 229.486 kb on + strand, within ABZR87_RS17255at 229.486 kb on + strand, within ABZR87_RS17255at 229.487 kb on - strand, within ABZR87_RS17255at 229.519 kb on + strand, within ABZR87_RS17255at 229.519 kb on + strand, within ABZR87_RS17255at 229.520 kb on - strand, within ABZR87_RS17255at 229.520 kb on - strand, within ABZR87_RS17255

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB
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227,587 + ABZR87_RS17245 0.28 -0.2
227,587 + ABZR87_RS17245 0.28 -0.1
227,588 - ABZR87_RS17245 0.28 -0.1
227,588 - ABZR87_RS17245 0.28 -2.4
227,644 + ABZR87_RS17245 0.35 -1.4
227,821 + ABZR87_RS17245 0.55 +0.5
227,821 + ABZR87_RS17245 0.55 +0.6
228,285 + +0.7
228,335 + -0.2
228,335 + -0.0
228,335 + -0.6
228,335 + +0.3
228,335 + -0.6
228,335 + +0.7
228,335 + +2.0
228,335 + +0.0
228,335 + +1.0
228,335 + +0.5
228,336 - -1.6
228,336 - -1.6
228,336 - -0.7
228,336 - -2.2
228,336 - -0.9
228,517 + ABZR87_RS17250 0.43 -0.8
228,545 + ABZR87_RS17250 0.49 -0.3
228,545 + ABZR87_RS17250 0.49 +0.2
228,545 + ABZR87_RS17250 0.49 +0.0
228,545 + ABZR87_RS17250 0.49 +1.4
228,545 + ABZR87_RS17250 0.49 -0.3
228,546 - ABZR87_RS17250 0.50 -0.9
228,546 - ABZR87_RS17250 0.50 -2.3
228,546 - ABZR87_RS17250 0.50 -1.1
228,546 - ABZR87_RS17250 0.50 +3.4
228,611 + ABZR87_RS17250 0.64 +0.0
228,611 + ABZR87_RS17250 0.64 -1.0
228,611 + ABZR87_RS17250 0.64 -0.3
228,612 - ABZR87_RS17250 0.64 -0.5
228,620 + ABZR87_RS17250 0.66 -0.3
228,623 + ABZR87_RS17250 0.66 -0.8
228,668 + ABZR87_RS17250 0.76 +0.7
228,668 + ABZR87_RS17250 0.76 -0.5
228,668 + ABZR87_RS17250 0.76 +0.4
228,668 + ABZR87_RS17250 0.76 +0.5
228,669 - ABZR87_RS17250 0.77 +0.1
228,746 + -0.1
228,747 - -2.8
228,747 - +0.8
229,240 + ABZR87_RS17255 0.39 -0.3
229,240 + ABZR87_RS17255 0.39 -0.6
229,240 + ABZR87_RS17255 0.39 +1.6
229,240 + ABZR87_RS17255 0.39 +0.7
229,240 + ABZR87_RS17255 0.39 +1.9
229,240 + ABZR87_RS17255 0.39 -0.3
229,241 - ABZR87_RS17255 0.39 +0.2
229,241 - ABZR87_RS17255 0.39 +0.4
229,241 - ABZR87_RS17255 0.39 +0.2
229,241 - ABZR87_RS17255 0.39 +0.2
229,241 - ABZR87_RS17255 0.39 -1.4
229,241 - ABZR87_RS17255 0.39 -0.4
229,296 + ABZR87_RS17255 0.43 +0.3
229,296 + ABZR87_RS17255 0.43 +1.7
229,296 + ABZR87_RS17255 0.43 -0.2
229,296 + ABZR87_RS17255 0.43 -1.0
229,296 + ABZR87_RS17255 0.43 +0.2
229,296 + ABZR87_RS17255 0.43 -0.0
229,296 + ABZR87_RS17255 0.43 -0.7
229,296 + ABZR87_RS17255 0.43 -0.7
229,296 + ABZR87_RS17255 0.43 +1.1
229,297 - ABZR87_RS17255 0.43 +0.6
229,297 - ABZR87_RS17255 0.43 +0.0
229,297 - ABZR87_RS17255 0.43 +0.2
229,297 - ABZR87_RS17255 0.43 +0.7
229,297 - ABZR87_RS17255 0.43 +0.9
229,297 - ABZR87_RS17255 0.43 -0.9
229,462 + ABZR87_RS17255 0.56 -0.0
229,462 + ABZR87_RS17255 0.56 -0.3
229,463 - ABZR87_RS17255 0.57 +0.3
229,463 - ABZR87_RS17255 0.57 -0.4
229,463 - ABZR87_RS17255 0.57 -0.1
229,486 + ABZR87_RS17255 0.58 -0.6
229,486 + ABZR87_RS17255 0.58 -1.1
229,487 - ABZR87_RS17255 0.58 +0.9
229,519 + ABZR87_RS17255 0.61 +0.0
229,519 + ABZR87_RS17255 0.61 +0.6
229,520 - ABZR87_RS17255 0.61 -0.3
229,520 - ABZR87_RS17255 0.61 -0.6

Or see this region's nucleotide sequence