Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17145

Experiment: soil sample 8; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17140 and ABZR87_RS17145 are separated by 26 nucleotidesABZR87_RS17145 and ABZR87_RS17150 are separated by 47 nucleotidesABZR87_RS17150 and ABZR87_RS17155 overlap by 4 nucleotides ABZR87_RS17140: ABZR87_RS17140 - LysR family transcriptional regulator, at 190,872 to 191,789 _RS17140 ABZR87_RS17145: ABZR87_RS17145 - AMP nucleosidase, at 191,816 to 193,297 _RS17145 ABZR87_RS17150: ABZR87_RS17150 - ABC transporter permease subunit, at 193,345 to 194,118 _RS17150 ABZR87_RS17155: ABZR87_RS17155 - amino acid ABC transporter permease, at 194,115 to 194,825 _RS17155 Position (kb) 191 192 193 194Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 190.862 kb on + strandat 190.871 kb on + strandat 190.871 kb on + strandat 190.871 kb on + strandat 190.871 kb on + strandat 190.872 kb on - strandat 190.872 kb on - strandat 190.908 kb on + strandat 191.048 kb on + strand, within ABZR87_RS17140at 191.325 kb on + strand, within ABZR87_RS17140at 191.326 kb on - strand, within ABZR87_RS17140at 191.326 kb on - strand, within ABZR87_RS17140at 191.361 kb on + strand, within ABZR87_RS17140at 191.941 kb on - strandat 192.015 kb on + strand, within ABZR87_RS17145at 192.015 kb on + strand, within ABZR87_RS17145at 192.102 kb on + strand, within ABZR87_RS17145at 192.103 kb on - strand, within ABZR87_RS17145at 192.115 kb on - strand, within ABZR87_RS17145at 192.115 kb on - strand, within ABZR87_RS17145at 192.115 kb on - strand, within ABZR87_RS17145at 192.115 kb on - strand, within ABZR87_RS17145at 192.160 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.303 kb on + strand, within ABZR87_RS17145at 192.304 kb on - strand, within ABZR87_RS17145at 192.304 kb on - strand, within ABZR87_RS17145at 192.304 kb on - strand, within ABZR87_RS17145at 192.321 kb on + strand, within ABZR87_RS17145at 192.322 kb on - strand, within ABZR87_RS17145at 192.322 kb on - strand, within ABZR87_RS17145at 192.322 kb on - strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.585 kb on + strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.586 kb on - strand, within ABZR87_RS17145at 192.645 kb on + strand, within ABZR87_RS17145at 192.646 kb on - strand, within ABZR87_RS17145at 192.655 kb on - strand, within ABZR87_RS17145at 192.705 kb on + strand, within ABZR87_RS17145at 192.706 kb on - strand, within ABZR87_RS17145at 192.706 kb on - strand, within ABZR87_RS17145at 192.706 kb on - strand, within ABZR87_RS17145at 192.711 kb on + strand, within ABZR87_RS17145at 192.711 kb on + strand, within ABZR87_RS17145at 192.712 kb on - strand, within ABZR87_RS17145at 192.712 kb on - strand, within ABZR87_RS17145at 192.712 kb on - strand, within ABZR87_RS17145at 192.789 kb on + strand, within ABZR87_RS17145at 192.789 kb on + strand, within ABZR87_RS17145at 192.790 kb on - strand, within ABZR87_RS17145at 192.790 kb on - strand, within ABZR87_RS17145at 192.790 kb on - strand, within ABZR87_RS17145at 192.790 kb on - strand, within ABZR87_RS17145at 192.790 kb on - strand, within ABZR87_RS17145at 192.839 kb on - strand, within ABZR87_RS17145at 192.839 kb on - strand, within ABZR87_RS17145at 192.957 kb on + strand, within ABZR87_RS17145at 192.957 kb on + strand, within ABZR87_RS17145at 192.958 kb on - strand, within ABZR87_RS17145at 192.958 kb on - strand, within ABZR87_RS17145at 192.980 kb on + strand, within ABZR87_RS17145at 192.981 kb on - strand, within ABZR87_RS17145at 192.987 kb on + strand, within ABZR87_RS17145at 192.990 kb on + strand, within ABZR87_RS17145at 192.990 kb on + strand, within ABZR87_RS17145at 192.990 kb on + strand, within ABZR87_RS17145at 192.991 kb on - strand, within ABZR87_RS17145at 193.029 kb on + strand, within ABZR87_RS17145at 193.041 kb on + strand, within ABZR87_RS17145at 193.110 kb on + strand, within ABZR87_RS17145at 193.116 kb on + strand, within ABZR87_RS17145at 193.116 kb on + strand, within ABZR87_RS17145at 193.117 kb on - strand, within ABZR87_RS17145at 193.117 kb on - strand, within ABZR87_RS17145at 193.200 kb on + strandat 193.200 kb on + strandat 193.201 kb on - strandat 193.201 kb on - strandat 193.276 kb on + strandat 193.276 kb on + strandat 193.309 kb on + strandat 193.310 kb on - strandat 193.346 kb on + strandat 193.346 kb on + strandat 193.347 kb on - strandat 193.347 kb on - strandat 193.347 kb on - strandat 193.490 kb on + strand, within ABZR87_RS17150at 193.490 kb on + strand, within ABZR87_RS17150at 193.490 kb on + strand, within ABZR87_RS17150at 193.491 kb on - strand, within ABZR87_RS17150at 193.491 kb on - strand, within ABZR87_RS17150at 193.513 kb on + strand, within ABZR87_RS17150at 193.513 kb on + strand, within ABZR87_RS17150at 193.514 kb on - strand, within ABZR87_RS17150at 193.589 kb on + strand, within ABZR87_RS17150at 193.589 kb on + strand, within ABZR87_RS17150at 193.589 kb on + strand, within ABZR87_RS17150at 193.589 kb on + strand, within ABZR87_RS17150at 193.650 kb on + strand, within ABZR87_RS17150at 193.650 kb on + strand, within ABZR87_RS17150at 193.650 kb on + strand, within ABZR87_RS17150at 193.651 kb on - strand, within ABZR87_RS17150at 193.651 kb on - strand, within ABZR87_RS17150at 193.651 kb on - strand, within ABZR87_RS17150at 193.775 kb on + strand, within ABZR87_RS17150at 193.775 kb on + strand, within ABZR87_RS17150at 193.775 kb on + strand, within ABZR87_RS17150at 193.775 kb on + strand, within ABZR87_RS17150at 193.776 kb on - strand, within ABZR87_RS17150at 193.776 kb on - strand, within ABZR87_RS17150at 193.776 kb on - strand, within ABZR87_RS17150at 193.860 kb on - strand, within ABZR87_RS17150at 193.860 kb on - strand, within ABZR87_RS17150at 193.860 kb on - strand, within ABZR87_RS17150at 193.882 kb on + strand, within ABZR87_RS17150at 194.084 kb on + strandat 194.085 kb on - strandat 194.085 kb on - strandat 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.282 kb on + strand, within ABZR87_RS17155at 194.283 kb on - strand, within ABZR87_RS17155at 194.284 kb on + strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB
remove
190,862 + -0.2
190,871 + -1.2
190,871 + +0.9
190,871 + +0.0
190,871 + -0.3
190,872 - -0.1
190,872 - -0.8
190,908 + +0.0
191,048 + ABZR87_RS17140 0.19 -0.4
191,325 + ABZR87_RS17140 0.49 +0.3
191,326 - ABZR87_RS17140 0.49 -0.5
191,326 - ABZR87_RS17140 0.49 -0.2
191,361 + ABZR87_RS17140 0.53 +0.2
191,941 - -3.4
192,015 + ABZR87_RS17145 0.13 -2.8
192,015 + ABZR87_RS17145 0.13 -4.3
192,102 + ABZR87_RS17145 0.19 -1.8
192,103 - ABZR87_RS17145 0.19 -2.0
192,115 - ABZR87_RS17145 0.20 -2.1
192,115 - ABZR87_RS17145 0.20 -2.9
192,115 - ABZR87_RS17145 0.20 -1.8
192,115 - ABZR87_RS17145 0.20 -3.0
192,160 + ABZR87_RS17145 0.23 -1.3
192,303 + ABZR87_RS17145 0.33 -3.8
192,303 + ABZR87_RS17145 0.33 -1.8
192,303 + ABZR87_RS17145 0.33 -0.6
192,303 + ABZR87_RS17145 0.33 -4.3
192,303 + ABZR87_RS17145 0.33 -3.0
192,303 + ABZR87_RS17145 0.33 -3.8
192,304 - ABZR87_RS17145 0.33 -1.5
192,304 - ABZR87_RS17145 0.33 -2.1
192,304 - ABZR87_RS17145 0.33 -0.9
192,321 + ABZR87_RS17145 0.34 -1.6
192,322 - ABZR87_RS17145 0.34 -3.3
192,322 - ABZR87_RS17145 0.34 -1.3
192,322 - ABZR87_RS17145 0.34 -2.9
192,585 + ABZR87_RS17145 0.52 -1.6
192,585 + ABZR87_RS17145 0.52 -2.0
192,585 + ABZR87_RS17145 0.52 -2.9
192,585 + ABZR87_RS17145 0.52 -1.4
192,585 + ABZR87_RS17145 0.52 -1.8
192,586 - ABZR87_RS17145 0.52 -2.8
192,586 - ABZR87_RS17145 0.52 -1.1
192,586 - ABZR87_RS17145 0.52 -0.6
192,586 - ABZR87_RS17145 0.52 -1.7
192,586 - ABZR87_RS17145 0.52 -2.3
192,586 - ABZR87_RS17145 0.52 -2.5
192,645 + ABZR87_RS17145 0.56 -2.4
192,646 - ABZR87_RS17145 0.56 -1.6
192,655 - ABZR87_RS17145 0.57 -3.5
192,705 + ABZR87_RS17145 0.60 -1.4
192,706 - ABZR87_RS17145 0.60 -2.0
192,706 - ABZR87_RS17145 0.60 -1.4
192,706 - ABZR87_RS17145 0.60 -2.3
192,711 + ABZR87_RS17145 0.60 -3.1
192,711 + ABZR87_RS17145 0.60 -1.7
192,712 - ABZR87_RS17145 0.60 -1.8
192,712 - ABZR87_RS17145 0.60 +0.0
192,712 - ABZR87_RS17145 0.60 -1.4
192,789 + ABZR87_RS17145 0.66 -1.5
192,789 + ABZR87_RS17145 0.66 -2.4
192,790 - ABZR87_RS17145 0.66 -2.7
192,790 - ABZR87_RS17145 0.66 -0.7
192,790 - ABZR87_RS17145 0.66 -2.5
192,790 - ABZR87_RS17145 0.66 -2.8
192,790 - ABZR87_RS17145 0.66 -3.7
192,839 - ABZR87_RS17145 0.69 -1.8
192,839 - ABZR87_RS17145 0.69 -2.2
192,957 + ABZR87_RS17145 0.77 -3.8
192,957 + ABZR87_RS17145 0.77 -3.0
192,958 - ABZR87_RS17145 0.77 -1.8
192,958 - ABZR87_RS17145 0.77 -0.9
192,980 + ABZR87_RS17145 0.79 -1.2
192,981 - ABZR87_RS17145 0.79 -0.1
192,987 + ABZR87_RS17145 0.79 -2.4
192,990 + ABZR87_RS17145 0.79 -2.6
192,990 + ABZR87_RS17145 0.79 -3.2
192,990 + ABZR87_RS17145 0.79 -2.3
192,991 - ABZR87_RS17145 0.79 -3.7
193,029 + ABZR87_RS17145 0.82 -4.9
193,041 + ABZR87_RS17145 0.83 -0.6
193,110 + ABZR87_RS17145 0.87 -2.5
193,116 + ABZR87_RS17145 0.88 -3.5
193,116 + ABZR87_RS17145 0.88 -0.1
193,117 - ABZR87_RS17145 0.88 -0.6
193,117 - ABZR87_RS17145 0.88 -1.7
193,200 + -4.2
193,200 + -1.3
193,201 - -0.1
193,201 - -3.9
193,276 + -1.2
193,276 + -2.5
193,309 + +0.5
193,310 - -0.0
193,346 + -1.2
193,346 + -0.5
193,347 - +0.7
193,347 - -0.3
193,347 - +0.2
193,490 + ABZR87_RS17150 0.19 +0.6
193,490 + ABZR87_RS17150 0.19 -0.3
193,490 + ABZR87_RS17150 0.19 -0.1
193,491 - ABZR87_RS17150 0.19 +0.0
193,491 - ABZR87_RS17150 0.19 -0.4
193,513 + ABZR87_RS17150 0.22 -0.1
193,513 + ABZR87_RS17150 0.22 -0.2
193,514 - ABZR87_RS17150 0.22 -0.3
193,589 + ABZR87_RS17150 0.32 -0.1
193,589 + ABZR87_RS17150 0.32 +1.1
193,589 + ABZR87_RS17150 0.32 -0.8
193,589 + ABZR87_RS17150 0.32 -0.2
193,650 + ABZR87_RS17150 0.39 +0.3
193,650 + ABZR87_RS17150 0.39 -0.3
193,650 + ABZR87_RS17150 0.39 -2.3
193,651 - ABZR87_RS17150 0.40 -0.6
193,651 - ABZR87_RS17150 0.40 -0.3
193,651 - ABZR87_RS17150 0.40 -1.4
193,775 + ABZR87_RS17150 0.56 -0.5
193,775 + ABZR87_RS17150 0.56 -0.8
193,775 + ABZR87_RS17150 0.56 -0.3
193,775 + ABZR87_RS17150 0.56 -0.0
193,776 - ABZR87_RS17150 0.56 +0.5
193,776 - ABZR87_RS17150 0.56 +0.7
193,776 - ABZR87_RS17150 0.56 +0.4
193,860 - ABZR87_RS17150 0.67 +0.5
193,860 - ABZR87_RS17150 0.67 -0.2
193,860 - ABZR87_RS17150 0.67 -0.2
193,882 + ABZR87_RS17150 0.69 -0.2
194,084 + +0.8
194,085 - +0.3
194,085 - -0.7
194,215 + ABZR87_RS17155 0.14 +0.3
194,215 + ABZR87_RS17155 0.14 +0.2
194,215 + ABZR87_RS17155 0.14 +1.0
194,215 + ABZR87_RS17155 0.14 -1.1
194,215 + ABZR87_RS17155 0.14 -0.4
194,215 + ABZR87_RS17155 0.14 -0.3
194,215 + ABZR87_RS17155 0.14 +2.3
194,215 + ABZR87_RS17155 0.14 +0.4
194,216 - ABZR87_RS17155 0.14 -0.0
194,216 - ABZR87_RS17155 0.14 +0.1
194,216 - ABZR87_RS17155 0.14 -1.0
194,216 - ABZR87_RS17155 0.14 -1.4
194,282 + ABZR87_RS17155 0.23 -0.8
194,283 - ABZR87_RS17155 0.24 -0.5
194,284 + ABZR87_RS17155 0.24 +0.7
194,285 - ABZR87_RS17155 0.24 -2.3
194,285 - ABZR87_RS17155 0.24 +0.0
194,285 - ABZR87_RS17155 0.24 -0.5
194,285 - ABZR87_RS17155 0.24 -0.2

Or see this region's nucleotide sequence