Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15225

Experiment: soil sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15210 and ABZR87_RS15215 are separated by 9 nucleotidesABZR87_RS15215 and ABZR87_RS15220 are separated by 115 nucleotidesABZR87_RS15220 and ABZR87_RS15225 are separated by 172 nucleotidesABZR87_RS15225 and ABZR87_RS15230 are separated by 264 nucleotidesABZR87_RS15230 and ABZR87_RS15235 are separated by 136 nucleotides ABZR87_RS15210: ABZR87_RS15210 - DMT family transporter, at 3,206,153 to 3,206,986 _RS15210 ABZR87_RS15215: ABZR87_RS15215 - transcription elongation factor GreB, at 3,206,996 to 3,207,559 _RS15215 ABZR87_RS15220: ABZR87_RS15220 - tRNA-Arg, at 3,207,675 to 3,207,751 _RS15220 ABZR87_RS15225: ABZR87_RS15225 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,207,924 to 3,210,344 _RS15225 ABZR87_RS15230: ABZR87_RS15230 - DNA-directed RNA polymerase subunit omega, at 3,210,609 to 3,210,812 _RS15230 ABZR87_RS15235: ABZR87_RS15235 - guanylate kinase, at 3,210,949 to 3,211,614 _RS15235 Position (kb) 3207 3208 3209 3210 3211Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3206.963 kb on + strandat 3207.015 kb on + strandat 3207.015 kb on + strandat 3207.015 kb on + strandat 3207.074 kb on - strand, within ABZR87_RS15215at 3207.201 kb on + strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.286 kb on + strand, within ABZR87_RS15215at 3207.287 kb on - strand, within ABZR87_RS15215at 3207.334 kb on - strand, within ABZR87_RS15215at 3207.340 kb on - strand, within ABZR87_RS15215at 3207.468 kb on + strand, within ABZR87_RS15215at 3207.468 kb on + strand, within ABZR87_RS15215at 3207.468 kb on + strand, within ABZR87_RS15215at 3207.469 kb on - strand, within ABZR87_RS15215at 3207.469 kb on - strand, within ABZR87_RS15215at 3207.469 kb on - strand, within ABZR87_RS15215at 3207.469 kb on - strand, within ABZR87_RS15215at 3207.591 kb on - strandat 3207.592 kb on + strandat 3207.593 kb on - strandat 3207.593 kb on - strandat 3207.755 kb on + strandat 3207.755 kb on + strandat 3207.755 kb on + strandat 3207.756 kb on - strandat 3207.756 kb on - strandat 3207.758 kb on + strandat 3207.829 kb on + strandat 3207.829 kb on + strandat 3207.829 kb on + strandat 3207.851 kb on + strandat 3207.851 kb on + strandat 3207.851 kb on + strandat 3207.852 kb on - strandat 3207.947 kb on + strandat 3207.947 kb on + strandat 3207.951 kb on - strandat 3207.951 kb on - strandat 3208.036 kb on + strandat 3208.036 kb on + strandat 3208.036 kb on + strandat 3208.036 kb on + strandat 3208.036 kb on + strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.136 kb on + strandat 3208.136 kb on + strandat 3208.136 kb on + strandat 3208.291 kb on + strand, within ABZR87_RS15225at 3208.291 kb on + strand, within ABZR87_RS15225at 3208.404 kb on + strand, within ABZR87_RS15225at 3208.404 kb on + strand, within ABZR87_RS15225at 3208.405 kb on - strand, within ABZR87_RS15225at 3208.405 kb on - strand, within ABZR87_RS15225at 3208.405 kb on - strand, within ABZR87_RS15225at 3208.921 kb on + strand, within ABZR87_RS15225at 3208.921 kb on + strand, within ABZR87_RS15225at 3208.921 kb on + strand, within ABZR87_RS15225at 3208.922 kb on - strand, within ABZR87_RS15225at 3208.922 kb on - strand, within ABZR87_RS15225at 3210.137 kb on - strandat 3210.495 kb on - strandat 3210.510 kb on + strandat 3210.511 kb on - strandat 3210.573 kb on + strandat 3210.573 kb on + strandat 3210.574 kb on - strandat 3210.585 kb on + strandat 3210.586 kb on - strandat 3210.595 kb on + strandat 3210.855 kb on + strandat 3210.856 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB
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3,206,963 + -0.3
3,207,015 + +0.5
3,207,015 + +0.4
3,207,015 + -0.0
3,207,074 - ABZR87_RS15215 0.14 +0.7
3,207,201 + ABZR87_RS15215 0.36 +0.4
3,207,202 - ABZR87_RS15215 0.37 -1.4
3,207,202 - ABZR87_RS15215 0.37 +0.8
3,207,202 - ABZR87_RS15215 0.37 +1.4
3,207,202 - ABZR87_RS15215 0.37 +0.9
3,207,202 - ABZR87_RS15215 0.37 -0.5
3,207,286 + ABZR87_RS15215 0.51 -1.3
3,207,287 - ABZR87_RS15215 0.52 +0.8
3,207,334 - ABZR87_RS15215 0.60 -0.2
3,207,340 - ABZR87_RS15215 0.61 -0.9
3,207,468 + ABZR87_RS15215 0.84 +0.0
3,207,468 + ABZR87_RS15215 0.84 +0.6
3,207,468 + ABZR87_RS15215 0.84 +0.5
3,207,469 - ABZR87_RS15215 0.84 +0.7
3,207,469 - ABZR87_RS15215 0.84 +1.5
3,207,469 - ABZR87_RS15215 0.84 +0.7
3,207,469 - ABZR87_RS15215 0.84 +0.3
3,207,591 - -1.4
3,207,592 + -0.6
3,207,593 - -0.4
3,207,593 - +1.7
3,207,755 + -0.7
3,207,755 + -0.1
3,207,755 + -0.8
3,207,756 - -0.6
3,207,756 - -1.1
3,207,758 + -1.6
3,207,829 + +1.0
3,207,829 + +0.4
3,207,829 + +0.2
3,207,851 + +0.3
3,207,851 + -0.5
3,207,851 + -0.3
3,207,852 - -0.7
3,207,947 + -0.2
3,207,947 + -0.1
3,207,951 - +0.4
3,207,951 - +0.2
3,208,036 + -1.1
3,208,036 + -1.0
3,208,036 + -0.3
3,208,036 + -0.1
3,208,036 + -2.0
3,208,037 - -0.1
3,208,037 - -0.7
3,208,037 - -0.7
3,208,037 - +0.2
3,208,037 - -0.1
3,208,037 - -0.8
3,208,136 + -2.0
3,208,136 + -0.5
3,208,136 + -0.1
3,208,291 + ABZR87_RS15225 0.15 -0.4
3,208,291 + ABZR87_RS15225 0.15 +0.3
3,208,404 + ABZR87_RS15225 0.20 -1.0
3,208,404 + ABZR87_RS15225 0.20 -0.3
3,208,405 - ABZR87_RS15225 0.20 -1.2
3,208,405 - ABZR87_RS15225 0.20 -0.7
3,208,405 - ABZR87_RS15225 0.20 -0.5
3,208,921 + ABZR87_RS15225 0.41 +0.7
3,208,921 + ABZR87_RS15225 0.41 -0.1
3,208,921 + ABZR87_RS15225 0.41 -1.0
3,208,922 - ABZR87_RS15225 0.41 -2.1
3,208,922 - ABZR87_RS15225 0.41 -1.5
3,210,137 - -2.2
3,210,495 - -0.2
3,210,510 + -1.7
3,210,511 - +0.2
3,210,573 + -3.8
3,210,573 + -2.2
3,210,574 - +0.3
3,210,585 + -1.7
3,210,586 - +0.4
3,210,595 + -1.4
3,210,855 + -0.2
3,210,856 - -0.1

Or see this region's nucleotide sequence