Experiment: soil sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09750 and ABZR87_RS09755 are separated by 4 nucleotides ABZR87_RS09755 and ABZR87_RS09760 overlap by 19 nucleotides ABZR87_RS09760 and ABZR87_RS09765 are separated by 237 nucleotides
ABZR87_RS09750: ABZR87_RS09750 - DNA topoisomerase IV subunit A, at 2,065,617 to 2,067,959
_RS09750
ABZR87_RS09755: ABZR87_RS09755 - chromate transporter, at 2,067,964 to 2,068,536
_RS09755
ABZR87_RS09760: ABZR87_RS09760 - chromate transporter, at 2,068,518 to 2,069,063
_RS09760
ABZR87_RS09765: ABZR87_RS09765 - amino acid permease, at 2,069,301 to 2,070,683
_RS09765
Position (kb)
2067
2068
2069 Strain fitness (log2 ratio)
-2
-1
0
1 at 2067.864 kb on + strand at 2068.294 kb on + strand, within ABZR87_RS09755 at 2068.294 kb on + strand, within ABZR87_RS09755 at 2068.294 kb on + strand, within ABZR87_RS09755 at 2068.294 kb on + strand, within ABZR87_RS09755 at 2068.295 kb on - strand, within ABZR87_RS09755 at 2068.295 kb on - strand, within ABZR87_RS09755 at 2068.295 kb on - strand, within ABZR87_RS09755 at 2068.295 kb on - strand, within ABZR87_RS09755 at 2068.539 kb on + strand at 2068.540 kb on - strand at 2068.540 kb on - strand at 2068.540 kb on - strand at 2068.540 kb on - strand at 2068.540 kb on - strand at 2068.656 kb on + strand, within ABZR87_RS09760 at 2068.656 kb on + strand, within ABZR87_RS09760 at 2068.657 kb on - strand, within ABZR87_RS09760 at 2068.657 kb on - strand, within ABZR87_RS09760 at 2068.657 kb on - strand, within ABZR87_RS09760 at 2068.686 kb on + strand, within ABZR87_RS09760 at 2068.686 kb on + strand, within ABZR87_RS09760 at 2068.687 kb on - strand, within ABZR87_RS09760 at 2068.687 kb on - strand, within ABZR87_RS09760 at 2068.687 kb on - strand, within ABZR87_RS09760 at 2068.687 kb on - strand, within ABZR87_RS09760 at 2068.687 kb on - strand, within ABZR87_RS09760 at 2068.687 kb on - strand, within ABZR87_RS09760 at 2069.062 kb on - strand at 2069.160 kb on + strand at 2069.182 kb on + strand at 2069.182 kb on + strand at 2069.183 kb on - strand at 2069.186 kb on + strand at 2069.187 kb on - strand at 2069.221 kb on - strand at 2069.286 kb on + strand at 2069.286 kb on + strand at 2069.287 kb on - strand at 2069.287 kb on - strand at 2069.287 kb on - strand at 2069.287 kb on - strand at 2069.287 kb on - strand at 2069.287 kb on - strand at 2069.287 kb on - strand at 2069.287 kb on - strand at 2069.337 kb on - strand at 2069.382 kb on + strand at 2069.433 kb on + strand at 2069.434 kb on - strand at 2069.434 kb on - strand at 2069.434 kb on - strand at 2069.458 kb on - strand, within ABZR87_RS09765
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB remove 2,067,864 + -1.0 2,068,294 + ABZR87_RS09755 0.58 -0.1 2,068,294 + ABZR87_RS09755 0.58 -0.9 2,068,294 + ABZR87_RS09755 0.58 -1.0 2,068,294 + ABZR87_RS09755 0.58 +1.2 2,068,295 - ABZR87_RS09755 0.58 -1.2 2,068,295 - ABZR87_RS09755 0.58 -0.2 2,068,295 - ABZR87_RS09755 0.58 -0.1 2,068,295 - ABZR87_RS09755 0.58 +0.2 2,068,539 + +1.1 2,068,540 - +0.9 2,068,540 - +1.6 2,068,540 - -1.9 2,068,540 - -0.1 2,068,540 - -0.1 2,068,656 + ABZR87_RS09760 0.25 +0.4 2,068,656 + ABZR87_RS09760 0.25 -0.1 2,068,657 - ABZR87_RS09760 0.25 +1.6 2,068,657 - ABZR87_RS09760 0.25 +0.5 2,068,657 - ABZR87_RS09760 0.25 -0.6 2,068,686 + ABZR87_RS09760 0.31 -1.3 2,068,686 + ABZR87_RS09760 0.31 +0.9 2,068,687 - ABZR87_RS09760 0.31 +1.4 2,068,687 - ABZR87_RS09760 0.31 +1.2 2,068,687 - ABZR87_RS09760 0.31 -0.2 2,068,687 - ABZR87_RS09760 0.31 +0.2 2,068,687 - ABZR87_RS09760 0.31 +0.4 2,068,687 - ABZR87_RS09760 0.31 +0.3 2,069,062 - +0.9 2,069,160 + +0.1 2,069,182 + +0.2 2,069,182 + -0.3 2,069,183 - -0.6 2,069,186 + +0.4 2,069,187 - +1.2 2,069,221 - -0.2 2,069,286 + +0.7 2,069,286 + +0.9 2,069,287 - -0.3 2,069,287 - -0.9 2,069,287 - -2.1 2,069,287 - -0.1 2,069,287 - -0.4 2,069,287 - -0.7 2,069,287 - -0.8 2,069,287 - -0.2 2,069,337 - +0.1 2,069,382 + -0.0 2,069,433 + -1.9 2,069,434 - +0.2 2,069,434 - -1.7 2,069,434 - +0.5 2,069,458 - ABZR87_RS09765 0.11 -0.1
Or see this region's nucleotide sequence