Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08985

Experiment: soil sample 8; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	soil sample 8; outgrowth in LB
1,905,867	+		ABZR87_RS08980	0.60	-1.3
1,905,868	-		ABZR87_RS08980	0.60	-0.8
1,905,868	-		ABZR87_RS08980	0.60	-2.3
1,906,171	+		ABZR87_RS08980	0.90	-2.5
1,906,171	+		ABZR87_RS08980	0.90	-4.6
1,906,172	-		ABZR87_RS08980	0.90	-1.7
1,906,172	-		ABZR87_RS08980	0.90	-1.5
1,906,172	-		ABZR87_RS08980	0.90	-1.1
1,906,172	-		ABZR87_RS08980	0.90	-2.0
1,906,224	+				-2.1
1,906,276	+				+0.5
1,906,277	-				-1.9
1,906,314	+				-0.3
1,906,334	+				+1.3
1,906,337	+				-0.2
1,906,337	+				+0.1
1,906,337	+				-0.6
1,906,337	+				-0.3
1,906,338	-				-2.3
1,906,338	-				-0.1
1,906,338	-				-1.9
1,906,338	-				-2.3
1,906,478	-		ABZR87_RS08985	0.10	+0.1
1,906,714	+		ABZR87_RS08985	0.28	-1.9
1,906,714	+		ABZR87_RS08985	0.28	-1.7
1,906,715	-		ABZR87_RS08985	0.28	-0.1
1,906,715	-		ABZR87_RS08985	0.28	-1.1
1,906,804	+		ABZR87_RS08985	0.35	-2.8
1,906,804	+		ABZR87_RS08985	0.35	-2.8
1,906,804	+		ABZR87_RS08985	0.35	-0.6
1,906,804	+		ABZR87_RS08985	0.35	-1.6
1,906,804	+		ABZR87_RS08985	0.35	-1.7
1,906,804	+		ABZR87_RS08985	0.35	-1.9
1,906,805	-		ABZR87_RS08985	0.35	-2.3
1,906,805	-		ABZR87_RS08985	0.35	-0.1
1,906,805	-		ABZR87_RS08985	0.35	-2.1
1,906,810	+		ABZR87_RS08985	0.36	-3.5
1,906,811	-		ABZR87_RS08985	0.36	+0.4
1,906,811	-		ABZR87_RS08985	0.36	-1.1
1,906,858	+		ABZR87_RS08985	0.39	+0.2
1,906,858	+		ABZR87_RS08985	0.39	-2.5
1,906,859	-		ABZR87_RS08985	0.39	-1.0
1,906,859	-		ABZR87_RS08985	0.39	-3.5
1,906,859	-		ABZR87_RS08985	0.39	-0.8
1,906,990	+		ABZR87_RS08985	0.49	-1.9
1,906,990	+		ABZR87_RS08985	0.49	-3.5
1,906,990	+		ABZR87_RS08985	0.49	-1.8
1,906,990	+		ABZR87_RS08985	0.49	-1.6
1,906,990	+		ABZR87_RS08985	0.49	-2.6
1,906,991	-		ABZR87_RS08985	0.50	-1.2
1,906,991	-		ABZR87_RS08985	0.50	-1.4
1,906,991	-		ABZR87_RS08985	0.50	-2.9
1,906,991	-		ABZR87_RS08985	0.50	-3.0
1,906,991	-		ABZR87_RS08985	0.50	-0.5
1,906,991	-		ABZR87_RS08985	0.50	-2.8
1,906,991	-		ABZR87_RS08985	0.50	-1.8
1,906,991	-		ABZR87_RS08985	0.50	-1.9
1,907,023	+		ABZR87_RS08985	0.52	-1.8
1,907,023	+		ABZR87_RS08985	0.52	-2.1
1,907,023	+		ABZR87_RS08985	0.52	-1.8
1,907,023	+		ABZR87_RS08985	0.52	+0.1
1,907,023	+		ABZR87_RS08985	0.52	-0.7
1,907,023	+		ABZR87_RS08985	0.52	-2.8
1,907,023	+		ABZR87_RS08985	0.52	-2.8
1,907,023	+		ABZR87_RS08985	0.52	-2.7
1,907,024	-		ABZR87_RS08985	0.52	-2.5
1,907,024	-		ABZR87_RS08985	0.52	-0.9
1,907,024	-		ABZR87_RS08985	0.52	-1.4
1,907,024	-		ABZR87_RS08985	0.52	-1.5
1,907,024	-		ABZR87_RS08985	0.52	-2.3
1,907,024	-		ABZR87_RS08985	0.52	-3.7
1,907,145	+		ABZR87_RS08985	0.61	-1.2
1,907,146	-		ABZR87_RS08985	0.61	-4.5
1,907,146	-		ABZR87_RS08985	0.61	-0.8
1,907,146	-		ABZR87_RS08985	0.61	-1.6
1,907,155	+		ABZR87_RS08985	0.62	-3.9
1,907,155	+		ABZR87_RS08985	0.62	-1.8
1,907,155	+		ABZR87_RS08985	0.62	-0.1
1,907,156	-		ABZR87_RS08985	0.62	-2.9
1,907,245	+		ABZR87_RS08985	0.69	-3.3
1,907,245	+		ABZR87_RS08985	0.69	-1.6
1,907,245	+		ABZR87_RS08985	0.69	-1.7
1,907,245	+		ABZR87_RS08985	0.69	-1.5
1,907,246	-		ABZR87_RS08985	0.69	+0.1
1,907,246	-		ABZR87_RS08985	0.69	-1.9
1,907,246	-		ABZR87_RS08985	0.69	-0.6
1,907,247	+		ABZR87_RS08985	0.69	-2.0
1,907,247	+		ABZR87_RS08985	0.69	-1.4
1,907,247	+		ABZR87_RS08985	0.69	-1.3
1,907,248	-		ABZR87_RS08985	0.69	-1.5
1,907,248	-		ABZR87_RS08985	0.69	-1.0
1,907,248	-		ABZR87_RS08985	0.69	-0.0
1,907,248	-		ABZR87_RS08985	0.69	+0.1
1,907,248	-		ABZR87_RS08985	0.69	-1.9
1,907,248	-		ABZR87_RS08985	0.69	-1.1
1,907,248	-		ABZR87_RS08985	0.69	-1.3
1,907,248	-		ABZR87_RS08985	0.69	-2.3
1,907,248	-		ABZR87_RS08985	0.69	-1.9
1,907,251	+		ABZR87_RS08985	0.69	-0.8
1,907,251	+		ABZR87_RS08985	0.69	-1.7
1,907,252	-		ABZR87_RS08985	0.70	-0.5
1,907,252	-		ABZR87_RS08985	0.70	+1.1
1,907,287	+		ABZR87_RS08985	0.72	-1.9
1,907,287	+		ABZR87_RS08985	0.72	-1.3
1,907,288	-		ABZR87_RS08985	0.72	-2.9
1,907,288	-		ABZR87_RS08985	0.72	-0.5
1,907,288	-		ABZR87_RS08985	0.72	-1.9
1,907,288	-		ABZR87_RS08985	0.72	-2.0
1,907,288	-		ABZR87_RS08985	0.72	-2.8
1,907,350	+		ABZR87_RS08985	0.77	-1.1
1,907,351	-		ABZR87_RS08985	0.77	-0.9
1,907,351	-		ABZR87_RS08985	0.77	-2.4
1,907,351	-		ABZR87_RS08985	0.77	-2.0
1,907,395	+		ABZR87_RS08985	0.80	-0.7
1,907,395	+		ABZR87_RS08985	0.80	-1.1
1,907,396	-		ABZR87_RS08985	0.81	-2.2
1,907,396	-		ABZR87_RS08985	0.81	-1.9
1,907,428	+		ABZR87_RS08985	0.83	-1.2
1,907,429	-		ABZR87_RS08985	0.83	-1.6
1,907,431	-		ABZR87_RS08985	0.83	-2.3
1,907,524	+				-1.5
1,907,524	+				+0.9
1,907,525	-				-1.8
1,907,525	-				-2.5
1,907,525	-				-1.2
1,907,581	-				-2.3
1,907,581	-				-1.2
1,907,647	+				+2.3
1,907,784	-		ABZR87_RS08990	0.20	-1.6
1,907,892	+		ABZR87_RS08990	0.41	-2.7
1,907,892	+		ABZR87_RS08990	0.41	-5.6
1,907,892	+		ABZR87_RS08990	0.41	-2.8
1,907,893	-		ABZR87_RS08990	0.41	-0.3
1,907,893	-		ABZR87_RS08990	0.41	-2.9
1,907,893	-		ABZR87_RS08990	0.41	-3.1
1,907,910	+		ABZR87_RS08990	0.44	-2.1
1,907,910	+		ABZR87_RS08990	0.44	-2.3
1,907,911	-		ABZR87_RS08990	0.44	-2.0
1,907,911	-		ABZR87_RS08990	0.44	-2.5
1,907,911	-		ABZR87_RS08990	0.44	-1.8
1,907,911	-		ABZR87_RS08990	0.44	-3.0
1,907,911	-		ABZR87_RS08990	0.44	-2.3
1,907,929	-		ABZR87_RS08990	0.48	+1.0
1,907,958	+		ABZR87_RS08990	0.53	-0.5
1,908,027	+		ABZR87_RS08990	0.67	-2.5
1,908,028	-		ABZR87_RS08990	0.67	-1.9
1,908,028	-		ABZR87_RS08990	0.67	-1.2
1,908,028	-		ABZR87_RS08990	0.67	-1.9
1,908,196	-				-0.5
1,908,254	+				-0.1
1,908,254	+				-0.4
1,908,254	+				-0.3
1,908,254	+				-0.4
1,908,254	+				-0.8
1,908,254	+				+0.0
1,908,254	+				+0.4
1,908,255	-				+0.0
1,908,255	-				+0.5
1,908,255	-				-2.3
1,908,255	-				-1.3
1,908,255	-				-1.7
1,908,255	-				-1.7
1,908,274	+				+0.2
1,908,274	+				+0.3
1,908,274	+				+0.0
1,908,274	+				+0.7
1,908,274	+				-0.2
1,908,274	+				-0.4
1,908,274	+				-0.1
1,908,274	+				-0.9
1,908,275	-				-0.5
1,908,275	-				+0.5
1,908,275	-				-2.8
1,908,275	-				-1.4
1,908,275	-				-0.2
1,908,297	-				-0.8
1,908,297	-				-2.4
1,908,599	+		ABZR87_RS08995	0.42	-1.8
1,908,599	+		ABZR87_RS08995	0.42	-0.7
1,908,599	+		ABZR87_RS08995	0.42	-0.6
1,908,600	-		ABZR87_RS08995	0.42	-1.3
1,908,600	-		ABZR87_RS08995	0.42	-0.6
1,908,600	-		ABZR87_RS08995	0.42	-3.0
1,908,602	+		ABZR87_RS08995	0.42	-2.6
1,908,602	+		ABZR87_RS08995	0.42	-3.5
1,908,603	-		ABZR87_RS08995	0.42	-0.9
1,908,603	-		ABZR87_RS08995	0.42	-1.1
1,908,603	-		ABZR87_RS08995	0.42	-3.6