Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08070

Experiment: soil sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08065 and ABZR87_RS08070 are separated by 47 nucleotidesABZR87_RS08070 and ABZR87_RS08075 are separated by 87 nucleotides ABZR87_RS08065: ABZR87_RS08065 - phosphoglycerate kinase, at 1,711,325 to 1,712,536 _RS08065 ABZR87_RS08070: ABZR87_RS08070 - pyruvate kinase, at 1,712,584 to 1,714,023 _RS08070 ABZR87_RS08075: ABZR87_RS08075 - class II fructose-bisphosphate aldolase, at 1,714,111 to 1,715,175 _RS08075 Position (kb) 1712 1713 1714 1715Strain fitness (log2 ratio) -1 0 1at 1712.908 kb on + strand, within ABZR87_RS08070at 1713.142 kb on + strand, within ABZR87_RS08070at 1713.787 kb on + strand, within ABZR87_RS08070at 1713.787 kb on + strand, within ABZR87_RS08070at 1714.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB
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1,712,908 + ABZR87_RS08070 0.23 -0.4
1,713,142 + ABZR87_RS08070 0.39 -1.4
1,713,787 + ABZR87_RS08070 0.84 -0.6
1,713,787 + ABZR87_RS08070 0.84 -1.4
1,714,099 + +0.6

Or see this region's nucleotide sequence