Experiment: soil sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05640 and ABZR87_RS05645 are separated by 16 nucleotides ABZR87_RS05645 and ABZR87_RS05650 are separated by 24 nucleotides ABZR87_RS05650 and ABZR87_RS05655 are separated by 279 nucleotides
ABZR87_RS05640: ABZR87_RS05640 - class I SAM-dependent methyltransferase, at 1,197,928 to 1,199,121
_RS05640
ABZR87_RS05645: ABZR87_RS05645 - SDR family oxidoreductase, at 1,199,138 to 1,199,956
_RS05645
ABZR87_RS05650: ABZR87_RS05650 - dihydroneopterin aldolase, at 1,199,981 to 1,200,379
_RS05650
ABZR87_RS05655: ABZR87_RS05655 - arginase, at 1,200,659 to 1,201,588
_RS05655
Position (kb)
1199
1200 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1199.132 kb on + strand at 1199.132 kb on + strand at 1199.132 kb on + strand at 1199.132 kb on + strand at 1199.468 kb on + strand, within ABZR87_RS05645 at 1199.468 kb on + strand, within ABZR87_RS05645 at 1199.468 kb on + strand, within ABZR87_RS05645 at 1199.492 kb on + strand, within ABZR87_RS05645 at 1199.492 kb on + strand, within ABZR87_RS05645 at 1199.492 kb on + strand, within ABZR87_RS05645 at 1199.492 kb on + strand, within ABZR87_RS05645 at 1199.506 kb on + strand, within ABZR87_RS05645 at 1199.654 kb on + strand, within ABZR87_RS05645 at 1199.654 kb on + strand, within ABZR87_RS05645 at 1199.654 kb on + strand, within ABZR87_RS05645 at 1199.855 kb on + strand, within ABZR87_RS05645 at 1199.855 kb on + strand, within ABZR87_RS05645 at 1199.855 kb on + strand, within ABZR87_RS05645 at 1199.954 kb on + strand at 1199.954 kb on + strand at 1199.954 kb on + strand at 1200.364 kb on + strand at 1200.509 kb on + strand at 1200.509 kb on + strand at 1200.601 kb on + strand at 1200.601 kb on + strand at 1200.601 kb on + strand at 1200.660 kb on + strand at 1200.660 kb on + strand at 1200.661 kb on - strand at 1200.661 kb on - strand at 1200.661 kb on - strand at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.771 kb on + strand, within ABZR87_RS05655 at 1200.772 kb on - strand, within ABZR87_RS05655 at 1200.772 kb on - strand, within ABZR87_RS05655 at 1200.772 kb on - strand, within ABZR87_RS05655 at 1200.772 kb on - strand, within ABZR87_RS05655
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB remove 1,199,132 + -0.1 1,199,132 + -0.4 1,199,132 + -0.6 1,199,132 + +0.4 1,199,468 + ABZR87_RS05645 0.40 -0.8 1,199,468 + ABZR87_RS05645 0.40 -2.4 1,199,468 + ABZR87_RS05645 0.40 -0.2 1,199,492 + ABZR87_RS05645 0.43 -0.9 1,199,492 + ABZR87_RS05645 0.43 +1.1 1,199,492 + ABZR87_RS05645 0.43 -0.2 1,199,492 + ABZR87_RS05645 0.43 -0.7 1,199,506 + ABZR87_RS05645 0.45 -2.1 1,199,654 + ABZR87_RS05645 0.63 -2.4 1,199,654 + ABZR87_RS05645 0.63 -0.0 1,199,654 + ABZR87_RS05645 0.63 -3.1 1,199,855 + ABZR87_RS05645 0.88 -1.8 1,199,855 + ABZR87_RS05645 0.88 -1.8 1,199,855 + ABZR87_RS05645 0.88 -1.5 1,199,954 + +0.0 1,199,954 + -0.2 1,199,954 + +0.4 1,200,364 + +0.1 1,200,509 + +0.6 1,200,509 + +0.1 1,200,601 + +0.2 1,200,601 + -0.0 1,200,601 + -0.0 1,200,660 + -0.8 1,200,660 + -1.2 1,200,661 - -0.0 1,200,661 - -0.1 1,200,661 - -0.2 1,200,771 + ABZR87_RS05655 0.12 -1.0 1,200,771 + ABZR87_RS05655 0.12 -0.2 1,200,771 + ABZR87_RS05655 0.12 -0.3 1,200,771 + ABZR87_RS05655 0.12 -0.1 1,200,771 + ABZR87_RS05655 0.12 -0.3 1,200,771 + ABZR87_RS05655 0.12 -1.8 1,200,771 + ABZR87_RS05655 0.12 +0.4 1,200,771 + ABZR87_RS05655 0.12 -1.4 1,200,772 - ABZR87_RS05655 0.12 +0.4 1,200,772 - ABZR87_RS05655 0.12 -0.3 1,200,772 - ABZR87_RS05655 0.12 -0.4 1,200,772 - ABZR87_RS05655 0.12 -0.5
Or see this region's nucleotide sequence