Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05645

Experiment: soil sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05640 and ABZR87_RS05645 are separated by 16 nucleotidesABZR87_RS05645 and ABZR87_RS05650 are separated by 24 nucleotidesABZR87_RS05650 and ABZR87_RS05655 are separated by 279 nucleotides ABZR87_RS05640: ABZR87_RS05640 - class I SAM-dependent methyltransferase, at 1,197,928 to 1,199,121 _RS05640 ABZR87_RS05645: ABZR87_RS05645 - SDR family oxidoreductase, at 1,199,138 to 1,199,956 _RS05645 ABZR87_RS05650: ABZR87_RS05650 - dihydroneopterin aldolase, at 1,199,981 to 1,200,379 _RS05650 ABZR87_RS05655: ABZR87_RS05655 - arginase, at 1,200,659 to 1,201,588 _RS05655 Position (kb) 1199 1200Strain fitness (log2 ratio) -3 -2 -1 0 1at 1199.132 kb on + strandat 1199.132 kb on + strandat 1199.132 kb on + strandat 1199.132 kb on + strandat 1199.468 kb on + strand, within ABZR87_RS05645at 1199.468 kb on + strand, within ABZR87_RS05645at 1199.468 kb on + strand, within ABZR87_RS05645at 1199.492 kb on + strand, within ABZR87_RS05645at 1199.492 kb on + strand, within ABZR87_RS05645at 1199.492 kb on + strand, within ABZR87_RS05645at 1199.492 kb on + strand, within ABZR87_RS05645at 1199.506 kb on + strand, within ABZR87_RS05645at 1199.654 kb on + strand, within ABZR87_RS05645at 1199.654 kb on + strand, within ABZR87_RS05645at 1199.654 kb on + strand, within ABZR87_RS05645at 1199.855 kb on + strand, within ABZR87_RS05645at 1199.855 kb on + strand, within ABZR87_RS05645at 1199.855 kb on + strand, within ABZR87_RS05645at 1199.954 kb on + strandat 1199.954 kb on + strandat 1199.954 kb on + strandat 1200.364 kb on + strandat 1200.509 kb on + strandat 1200.509 kb on + strandat 1200.601 kb on + strandat 1200.601 kb on + strandat 1200.601 kb on + strandat 1200.660 kb on + strandat 1200.660 kb on + strandat 1200.661 kb on - strandat 1200.661 kb on - strandat 1200.661 kb on - strandat 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.771 kb on + strand, within ABZR87_RS05655at 1200.772 kb on - strand, within ABZR87_RS05655at 1200.772 kb on - strand, within ABZR87_RS05655at 1200.772 kb on - strand, within ABZR87_RS05655at 1200.772 kb on - strand, within ABZR87_RS05655

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB
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1,199,132 + -0.1
1,199,132 + -0.4
1,199,132 + -0.6
1,199,132 + +0.4
1,199,468 + ABZR87_RS05645 0.40 -0.8
1,199,468 + ABZR87_RS05645 0.40 -2.4
1,199,468 + ABZR87_RS05645 0.40 -0.2
1,199,492 + ABZR87_RS05645 0.43 -0.9
1,199,492 + ABZR87_RS05645 0.43 +1.1
1,199,492 + ABZR87_RS05645 0.43 -0.2
1,199,492 + ABZR87_RS05645 0.43 -0.7
1,199,506 + ABZR87_RS05645 0.45 -2.1
1,199,654 + ABZR87_RS05645 0.63 -2.4
1,199,654 + ABZR87_RS05645 0.63 -0.0
1,199,654 + ABZR87_RS05645 0.63 -3.1
1,199,855 + ABZR87_RS05645 0.88 -1.8
1,199,855 + ABZR87_RS05645 0.88 -1.8
1,199,855 + ABZR87_RS05645 0.88 -1.5
1,199,954 + +0.0
1,199,954 + -0.2
1,199,954 + +0.4
1,200,364 + +0.1
1,200,509 + +0.6
1,200,509 + +0.1
1,200,601 + +0.2
1,200,601 + -0.0
1,200,601 + -0.0
1,200,660 + -0.8
1,200,660 + -1.2
1,200,661 - -0.0
1,200,661 - -0.1
1,200,661 - -0.2
1,200,771 + ABZR87_RS05655 0.12 -1.0
1,200,771 + ABZR87_RS05655 0.12 -0.2
1,200,771 + ABZR87_RS05655 0.12 -0.3
1,200,771 + ABZR87_RS05655 0.12 -0.1
1,200,771 + ABZR87_RS05655 0.12 -0.3
1,200,771 + ABZR87_RS05655 0.12 -1.8
1,200,771 + ABZR87_RS05655 0.12 +0.4
1,200,771 + ABZR87_RS05655 0.12 -1.4
1,200,772 - ABZR87_RS05655 0.12 +0.4
1,200,772 - ABZR87_RS05655 0.12 -0.3
1,200,772 - ABZR87_RS05655 0.12 -0.4
1,200,772 - ABZR87_RS05655 0.12 -0.5

Or see this region's nucleotide sequence