Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04310

Experiment: soil sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04300 and ABZR87_RS04305 are separated by 112 nucleotidesABZR87_RS04305 and ABZR87_RS04310 are separated by 16 nucleotidesABZR87_RS04310 and ABZR87_RS04315 are separated by 34 nucleotides ABZR87_RS04300: ABZR87_RS04300 - DUF2272 domain-containing protein, at 896,380 to 897,327 _RS04300 ABZR87_RS04305: ABZR87_RS04305 - class II aldolase/adducin family protein, at 897,440 to 898,264 _RS04305 ABZR87_RS04310: ABZR87_RS04310 - 2-dehydropantoate 2-reductase, at 898,281 to 899,258 _RS04310 ABZR87_RS04315: ABZR87_RS04315 - fimbrial protein, at 899,293 to 900,297 _RS04315 Position (kb) 898 899 900Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 897.302 kb on + strandat 897.302 kb on + strandat 897.302 kb on + strandat 897.302 kb on + strandat 897.302 kb on + strandat 897.302 kb on + strandat 897.303 kb on - strandat 897.303 kb on - strandat 897.325 kb on + strandat 897.326 kb on - strandat 897.341 kb on + strandat 897.341 kb on + strandat 897.341 kb on + strandat 897.341 kb on + strandat 897.341 kb on + strandat 897.342 kb on - strandat 897.342 kb on - strandat 897.342 kb on - strandat 897.342 kb on - strandat 897.342 kb on - strandat 897.549 kb on - strand, within ABZR87_RS04305at 897.587 kb on + strand, within ABZR87_RS04305at 897.587 kb on + strand, within ABZR87_RS04305at 897.587 kb on + strand, within ABZR87_RS04305at 897.588 kb on - strand, within ABZR87_RS04305at 897.588 kb on - strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.679 kb on + strand, within ABZR87_RS04305at 897.680 kb on - strand, within ABZR87_RS04305at 897.706 kb on - strand, within ABZR87_RS04305at 897.926 kb on + strand, within ABZR87_RS04305at 897.927 kb on - strand, within ABZR87_RS04305at 897.947 kb on - strand, within ABZR87_RS04305at 897.947 kb on - strand, within ABZR87_RS04305at 898.253 kb on + strandat 898.254 kb on - strandat 898.280 kb on + strandat 898.280 kb on + strandat 898.280 kb on + strandat 898.280 kb on + strandat 898.281 kb on - strandat 898.323 kb on + strandat 898.323 kb on + strandat 898.324 kb on - strandat 898.324 kb on - strandat 898.441 kb on + strand, within ABZR87_RS04310at 898.441 kb on + strand, within ABZR87_RS04310at 898.442 kb on - strand, within ABZR87_RS04310at 898.442 kb on - strand, within ABZR87_RS04310at 898.442 kb on - strand, within ABZR87_RS04310at 899.199 kb on + strandat 899.200 kb on - strandat 899.201 kb on + strandat 899.202 kb on - strandat 899.202 kb on - strandat 899.253 kb on + strandat 899.294 kb on + strandat 899.295 kb on - strandat 899.295 kb on - strandat 899.295 kb on - strandat 899.300 kb on + strandat 899.300 kb on + strandat 899.300 kb on + strandat 899.300 kb on + strandat 899.300 kb on + strandat 899.300 kb on + strandat 899.301 kb on - strandat 899.301 kb on - strandat 899.301 kb on - strandat 899.301 kb on - strandat 899.317 kb on - strandat 899.366 kb on + strandat 899.366 kb on + strandat 899.366 kb on + strandat 899.366 kb on + strandat 899.390 kb on + strandat 899.390 kb on + strandat 899.390 kb on + strandat 899.390 kb on + strandat 899.390 kb on + strandat 899.391 kb on - strandat 899.391 kb on - strandat 899.391 kb on - strandat 899.391 kb on - strandat 899.391 kb on - strandat 899.391 kb on - strandat 899.606 kb on + strand, within ABZR87_RS04315at 899.606 kb on + strand, within ABZR87_RS04315at 899.607 kb on - strand, within ABZR87_RS04315at 899.607 kb on - strand, within ABZR87_RS04315at 899.607 kb on - strand, within ABZR87_RS04315at 899.607 kb on - strand, within ABZR87_RS04315at 899.837 kb on + strand, within ABZR87_RS04315at 899.837 kb on + strand, within ABZR87_RS04315at 899.838 kb on - strand, within ABZR87_RS04315at 899.861 kb on + strand, within ABZR87_RS04315at 899.861 kb on + strand, within ABZR87_RS04315at 899.861 kb on + strand, within ABZR87_RS04315at 899.861 kb on + strand, within ABZR87_RS04315at 899.861 kb on + strand, within ABZR87_RS04315at 899.861 kb on + strand, within ABZR87_RS04315at 899.861 kb on + strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.862 kb on - strand, within ABZR87_RS04315at 899.945 kb on + strand, within ABZR87_RS04315at 900.004 kb on - strand, within ABZR87_RS04315at 900.004 kb on - strand, within ABZR87_RS04315at 900.014 kb on + strand, within ABZR87_RS04315at 900.015 kb on - strand, within ABZR87_RS04315at 900.044 kb on + strand, within ABZR87_RS04315at 900.044 kb on + strand, within ABZR87_RS04315at 900.044 kb on + strand, within ABZR87_RS04315at 900.044 kb on + strand, within ABZR87_RS04315at 900.044 kb on + strand, within ABZR87_RS04315at 900.044 kb on + strand, within ABZR87_RS04315at 900.044 kb on + strand, within ABZR87_RS04315at 900.044 kb on + strand, within ABZR87_RS04315at 900.045 kb on - strand, within ABZR87_RS04315at 900.045 kb on - strand, within ABZR87_RS04315at 900.045 kb on - strand, within ABZR87_RS04315at 900.045 kb on - strand, within ABZR87_RS04315at 900.045 kb on - strand, within ABZR87_RS04315at 900.045 kb on - strand, within ABZR87_RS04315at 900.045 kb on - strand, within ABZR87_RS04315at 900.045 kb on - strand, within ABZR87_RS04315at 900.053 kb on + strand, within ABZR87_RS04315at 900.053 kb on + strand, within ABZR87_RS04315at 900.053 kb on + strand, within ABZR87_RS04315at 900.061 kb on - strand, within ABZR87_RS04315at 900.081 kb on + strand, within ABZR87_RS04315at 900.081 kb on + strand, within ABZR87_RS04315at 900.081 kb on + strand, within ABZR87_RS04315at 900.081 kb on + strand, within ABZR87_RS04315at 900.082 kb on - strand, within ABZR87_RS04315at 900.082 kb on - strand, within ABZR87_RS04315at 900.082 kb on - strand, within ABZR87_RS04315at 900.082 kb on - strand, within ABZR87_RS04315at 900.110 kb on + strand, within ABZR87_RS04315at 900.142 kb on - strand, within ABZR87_RS04315at 900.142 kb on - strand, within ABZR87_RS04315at 900.213 kb on + strandat 900.213 kb on + strandat 900.214 kb on - strandat 900.214 kb on - strandat 900.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB
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897,302 + +0.3
897,302 + +0.2
897,302 + +0.8
897,302 + -1.2
897,302 + -0.8
897,302 + -0.8
897,303 - -1.1
897,303 - -0.4
897,325 + -0.2
897,326 - +0.7
897,341 + -1.4
897,341 + -0.0
897,341 + -0.3
897,341 + +0.5
897,341 + -0.4
897,342 - +0.1
897,342 - -0.1
897,342 - -1.2
897,342 - +0.5
897,342 - -1.4
897,549 - ABZR87_RS04305 0.13 -0.5
897,587 + ABZR87_RS04305 0.18 +0.5
897,587 + ABZR87_RS04305 0.18 +0.1
897,587 + ABZR87_RS04305 0.18 +0.3
897,588 - ABZR87_RS04305 0.18 +0.1
897,588 - ABZR87_RS04305 0.18 +0.4
897,677 + ABZR87_RS04305 0.29 +0.0
897,677 + ABZR87_RS04305 0.29 -0.6
897,677 + ABZR87_RS04305 0.29 -0.2
897,677 + ABZR87_RS04305 0.29 +0.2
897,677 + ABZR87_RS04305 0.29 +1.3
897,678 - ABZR87_RS04305 0.29 -1.4
897,678 - ABZR87_RS04305 0.29 -0.8
897,678 - ABZR87_RS04305 0.29 +0.5
897,678 - ABZR87_RS04305 0.29 +0.2
897,678 - ABZR87_RS04305 0.29 -1.5
897,678 - ABZR87_RS04305 0.29 -0.2
897,679 + ABZR87_RS04305 0.29 -0.8
897,680 - ABZR87_RS04305 0.29 +0.4
897,706 - ABZR87_RS04305 0.32 -0.1
897,926 + ABZR87_RS04305 0.59 -0.0
897,927 - ABZR87_RS04305 0.59 +0.3
897,947 - ABZR87_RS04305 0.61 +0.6
897,947 - ABZR87_RS04305 0.61 +1.0
898,253 + +0.7
898,254 - -0.1
898,280 + -0.2
898,280 + -0.1
898,280 + -0.5
898,280 + -0.2
898,281 - -0.5
898,323 + -0.3
898,323 + -0.5
898,324 - -0.5
898,324 - +1.2
898,441 + ABZR87_RS04310 0.16 -1.8
898,441 + ABZR87_RS04310 0.16 +0.3
898,442 - ABZR87_RS04310 0.16 -0.6
898,442 - ABZR87_RS04310 0.16 -0.9
898,442 - ABZR87_RS04310 0.16 +0.7
899,199 + -0.0
899,200 - +0.1
899,201 + -0.1
899,202 - -0.7
899,202 - +1.2
899,253 + -0.7
899,294 + +0.5
899,295 - +0.0
899,295 - +2.6
899,295 - -0.8
899,300 + -0.4
899,300 + -0.1
899,300 + +0.2
899,300 + +0.2
899,300 + +0.1
899,300 + -0.6
899,301 - +0.9
899,301 - -0.3
899,301 - +0.7
899,301 - +0.5
899,317 - -0.1
899,366 + +1.9
899,366 + -0.3
899,366 + +0.6
899,366 + -0.9
899,390 + -0.1
899,390 + +0.2
899,390 + +0.8
899,390 + +0.6
899,390 + -1.1
899,391 - +0.6
899,391 - +1.0
899,391 - -0.3
899,391 - -0.2
899,391 - +0.2
899,391 - +0.8
899,606 + ABZR87_RS04315 0.31 +0.5
899,606 + ABZR87_RS04315 0.31 +0.1
899,607 - ABZR87_RS04315 0.31 +0.4
899,607 - ABZR87_RS04315 0.31 +0.2
899,607 - ABZR87_RS04315 0.31 -0.2
899,607 - ABZR87_RS04315 0.31 +0.8
899,837 + ABZR87_RS04315 0.54 +0.3
899,837 + ABZR87_RS04315 0.54 +1.5
899,838 - ABZR87_RS04315 0.54 -0.7
899,861 + ABZR87_RS04315 0.57 -0.2
899,861 + ABZR87_RS04315 0.57 +0.9
899,861 + ABZR87_RS04315 0.57 +0.3
899,861 + ABZR87_RS04315 0.57 -0.9
899,861 + ABZR87_RS04315 0.57 -0.1
899,861 + ABZR87_RS04315 0.57 -0.4
899,861 + ABZR87_RS04315 0.57 +0.1
899,862 - ABZR87_RS04315 0.57 -2.8
899,862 - ABZR87_RS04315 0.57 -1.0
899,862 - ABZR87_RS04315 0.57 -0.9
899,862 - ABZR87_RS04315 0.57 -0.8
899,862 - ABZR87_RS04315 0.57 +0.4
899,862 - ABZR87_RS04315 0.57 -0.2
899,862 - ABZR87_RS04315 0.57 -0.3
899,862 - ABZR87_RS04315 0.57 +0.1
899,862 - ABZR87_RS04315 0.57 -0.9
899,862 - ABZR87_RS04315 0.57 -0.3
899,862 - ABZR87_RS04315 0.57 +0.3
899,945 + ABZR87_RS04315 0.65 -0.1
900,004 - ABZR87_RS04315 0.71 +0.5
900,004 - ABZR87_RS04315 0.71 -0.3
900,014 + ABZR87_RS04315 0.72 -1.3
900,015 - ABZR87_RS04315 0.72 -0.9
900,044 + ABZR87_RS04315 0.75 +1.0
900,044 + ABZR87_RS04315 0.75 -0.2
900,044 + ABZR87_RS04315 0.75 +0.2
900,044 + ABZR87_RS04315 0.75 -0.3
900,044 + ABZR87_RS04315 0.75 -0.1
900,044 + ABZR87_RS04315 0.75 +1.5
900,044 + ABZR87_RS04315 0.75 -0.3
900,044 + ABZR87_RS04315 0.75 +0.4
900,045 - ABZR87_RS04315 0.75 -0.3
900,045 - ABZR87_RS04315 0.75 -0.6
900,045 - ABZR87_RS04315 0.75 +0.0
900,045 - ABZR87_RS04315 0.75 +1.5
900,045 - ABZR87_RS04315 0.75 -1.3
900,045 - ABZR87_RS04315 0.75 +0.1
900,045 - ABZR87_RS04315 0.75 +0.4
900,045 - ABZR87_RS04315 0.75 -0.4
900,053 + ABZR87_RS04315 0.76 +0.1
900,053 + ABZR87_RS04315 0.76 +0.3
900,053 + ABZR87_RS04315 0.76 +1.0
900,061 - ABZR87_RS04315 0.76 +0.5
900,081 + ABZR87_RS04315 0.78 +0.5
900,081 + ABZR87_RS04315 0.78 +0.9
900,081 + ABZR87_RS04315 0.78 -1.4
900,081 + ABZR87_RS04315 0.78 -0.5
900,082 - ABZR87_RS04315 0.79 -0.1
900,082 - ABZR87_RS04315 0.79 +0.7
900,082 - ABZR87_RS04315 0.79 -0.7
900,082 - ABZR87_RS04315 0.79 +0.6
900,110 + ABZR87_RS04315 0.81 -0.6
900,142 - ABZR87_RS04315 0.84 -1.3
900,142 - ABZR87_RS04315 0.84 +0.0
900,213 + -0.5
900,213 + -0.6
900,214 - -0.4
900,214 - -1.0
900,231 - +0.4

Or see this region's nucleotide sequence