Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01870

Experiment: soil sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01860 and ABZR87_RS01865 are separated by 134 nucleotidesABZR87_RS01865 and ABZR87_RS01870 are separated by 8 nucleotidesABZR87_RS01870 and ABZR87_RS01875 overlap by 8 nucleotidesABZR87_RS01875 and ABZR87_RS01880 overlap by 11 nucleotides ABZR87_RS01860: ABZR87_RS01860 - dephospho-CoA kinase, at 395,004 to 395,618 _RS01860 ABZR87_RS01865: ABZR87_RS01865 - cell division protein ZapD, at 395,753 to 396,511 _RS01865 ABZR87_RS01870: ABZR87_RS01870 - DNA gyrase inhibitor YacG, at 396,520 to 396,723 _RS01870 ABZR87_RS01875: ABZR87_RS01875 - NUDIX domain-containing protein, at 396,716 to 397,165 _RS01875 ABZR87_RS01880: ABZR87_RS01880 - ATP-binding protein, at 397,155 to 398,039 _RS01880 Position (kb) 396 397Strain fitness (log2 ratio) -2 -1 0 1 2at 395.558 kb on + strandat 395.605 kb on - strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.676 kb on + strandat 395.677 kb on - strandat 395.677 kb on - strandat 395.719 kb on + strandat 395.719 kb on + strandat 395.720 kb on - strandat 395.720 kb on - strandat 395.720 kb on - strandat 395.762 kb on + strandat 395.762 kb on + strandat 395.762 kb on + strandat 395.763 kb on - strandat 395.768 kb on + strandat 395.770 kb on + strandat 396.136 kb on + strand, within ABZR87_RS01865at 396.136 kb on + strand, within ABZR87_RS01865at 396.136 kb on + strand, within ABZR87_RS01865at 396.137 kb on - strand, within ABZR87_RS01865at 396.137 kb on - strand, within ABZR87_RS01865at 396.161 kb on + strand, within ABZR87_RS01865at 396.162 kb on - strand, within ABZR87_RS01865at 396.304 kb on + strand, within ABZR87_RS01865at 396.305 kb on - strand, within ABZR87_RS01865at 396.317 kb on + strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.318 kb on - strand, within ABZR87_RS01865at 396.345 kb on - strand, within ABZR87_RS01865at 396.360 kb on + strand, within ABZR87_RS01865at 396.360 kb on + strand, within ABZR87_RS01865at 396.361 kb on - strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.413 kb on + strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.414 kb on - strand, within ABZR87_RS01865at 396.433 kb on + strand, within ABZR87_RS01865at 396.433 kb on + strand, within ABZR87_RS01865at 396.649 kb on + strand, within ABZR87_RS01870at 396.649 kb on + strand, within ABZR87_RS01870at 396.649 kb on + strand, within ABZR87_RS01870at 396.649 kb on + strand, within ABZR87_RS01870at 396.649 kb on + strand, within ABZR87_RS01870at 396.650 kb on - strand, within ABZR87_RS01870at 396.702 kb on + strand, within ABZR87_RS01870at 396.702 kb on + strand, within ABZR87_RS01870at 396.702 kb on + strand, within ABZR87_RS01870at 396.702 kb on + strand, within ABZR87_RS01870at 396.703 kb on - strandat 396.721 kb on + strandat 396.722 kb on - strandat 396.879 kb on + strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.880 kb on - strand, within ABZR87_RS01875at 396.892 kb on - strand, within ABZR87_RS01875at 396.905 kb on - strand, within ABZR87_RS01875at 396.905 kb on - strand, within ABZR87_RS01875at 397.020 kb on + strand, within ABZR87_RS01875at 397.029 kb on + strand, within ABZR87_RS01875at 397.029 kb on + strand, within ABZR87_RS01875at 397.029 kb on + strand, within ABZR87_RS01875at 397.030 kb on - strand, within ABZR87_RS01875at 397.030 kb on - strand, within ABZR87_RS01875at 397.030 kb on - strand, within ABZR87_RS01875at 397.030 kb on - strand, within ABZR87_RS01875at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.330 kb on + strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.331 kb on - strand, within ABZR87_RS01880at 397.352 kb on - strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.444 kb on + strand, within ABZR87_RS01880at 397.445 kb on - strand, within ABZR87_RS01880at 397.445 kb on - strand, within ABZR87_RS01880at 397.445 kb on - strand, within ABZR87_RS01880at 397.465 kb on + strand, within ABZR87_RS01880at 397.465 kb on + strand, within ABZR87_RS01880at 397.465 kb on + strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.466 kb on - strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.501 kb on + strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.502 kb on - strand, within ABZR87_RS01880at 397.565 kb on - strand, within ABZR87_RS01880at 397.565 kb on - strand, within ABZR87_RS01880

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB
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395,558 + -1.3
395,605 - -0.4
395,676 + +2.4
395,676 + +0.7
395,676 + +0.1
395,676 + +0.7
395,676 + +0.5
395,676 + +1.2
395,676 + -0.6
395,676 + +1.6
395,676 + +0.3
395,676 + -0.8
395,676 + +0.9
395,677 - +0.6
395,677 - -0.2
395,719 + -0.2
395,719 + +0.2
395,720 - -0.9
395,720 - +1.2
395,720 - -0.6
395,762 + -0.8
395,762 + +0.4
395,762 + +0.2
395,763 - -1.0
395,768 + -0.5
395,770 + -0.3
396,136 + ABZR87_RS01865 0.50 +0.1
396,136 + ABZR87_RS01865 0.50 -1.8
396,136 + ABZR87_RS01865 0.50 -0.9
396,137 - ABZR87_RS01865 0.51 -0.4
396,137 - ABZR87_RS01865 0.51 -0.2
396,161 + ABZR87_RS01865 0.54 -0.4
396,162 - ABZR87_RS01865 0.54 -0.8
396,304 + ABZR87_RS01865 0.73 -0.6
396,305 - ABZR87_RS01865 0.73 -1.6
396,317 + ABZR87_RS01865 0.74 -0.1
396,318 - ABZR87_RS01865 0.74 -1.5
396,318 - ABZR87_RS01865 0.74 -0.8
396,318 - ABZR87_RS01865 0.74 -1.0
396,318 - ABZR87_RS01865 0.74 -1.1
396,345 - ABZR87_RS01865 0.78 -1.3
396,360 + ABZR87_RS01865 0.80 +0.5
396,360 + ABZR87_RS01865 0.80 -0.3
396,361 - ABZR87_RS01865 0.80 -2.0
396,413 + ABZR87_RS01865 0.87 -0.1
396,413 + ABZR87_RS01865 0.87 -0.1
396,413 + ABZR87_RS01865 0.87 +0.3
396,413 + ABZR87_RS01865 0.87 +0.4
396,413 + ABZR87_RS01865 0.87 +0.3
396,413 + ABZR87_RS01865 0.87 -0.3
396,413 + ABZR87_RS01865 0.87 -0.5
396,414 - ABZR87_RS01865 0.87 -0.6
396,414 - ABZR87_RS01865 0.87 -0.8
396,414 - ABZR87_RS01865 0.87 -0.3
396,414 - ABZR87_RS01865 0.87 -0.0
396,414 - ABZR87_RS01865 0.87 -0.0
396,414 - ABZR87_RS01865 0.87 -0.7
396,414 - ABZR87_RS01865 0.87 -0.6
396,414 - ABZR87_RS01865 0.87 -1.3
396,414 - ABZR87_RS01865 0.87 -1.2
396,414 - ABZR87_RS01865 0.87 +0.3
396,414 - ABZR87_RS01865 0.87 -1.9
396,414 - ABZR87_RS01865 0.87 -0.2
396,414 - ABZR87_RS01865 0.87 -0.5
396,414 - ABZR87_RS01865 0.87 -0.1
396,433 + ABZR87_RS01865 0.90 +0.0
396,433 + ABZR87_RS01865 0.90 -0.1
396,649 + ABZR87_RS01870 0.63 -0.3
396,649 + ABZR87_RS01870 0.63 -0.3
396,649 + ABZR87_RS01870 0.63 -0.1
396,649 + ABZR87_RS01870 0.63 +0.3
396,649 + ABZR87_RS01870 0.63 +0.6
396,650 - ABZR87_RS01870 0.64 -0.3
396,702 + ABZR87_RS01870 0.89 -0.4
396,702 + ABZR87_RS01870 0.89 -0.1
396,702 + ABZR87_RS01870 0.89 +1.1
396,702 + ABZR87_RS01870 0.89 +0.3
396,703 - -0.2
396,721 + +0.3
396,722 - +0.2
396,879 + ABZR87_RS01875 0.36 +0.3
396,880 - ABZR87_RS01875 0.36 +0.0
396,880 - ABZR87_RS01875 0.36 +0.3
396,880 - ABZR87_RS01875 0.36 +0.1
396,880 - ABZR87_RS01875 0.36 -0.1
396,880 - ABZR87_RS01875 0.36 +0.5
396,880 - ABZR87_RS01875 0.36 -0.7
396,880 - ABZR87_RS01875 0.36 +0.3
396,880 - ABZR87_RS01875 0.36 -0.1
396,892 - ABZR87_RS01875 0.39 +0.3
396,905 - ABZR87_RS01875 0.42 -1.2
396,905 - ABZR87_RS01875 0.42 +0.4
397,020 + ABZR87_RS01875 0.68 -0.0
397,029 + ABZR87_RS01875 0.70 +1.2
397,029 + ABZR87_RS01875 0.70 -0.0
397,029 + ABZR87_RS01875 0.70 -0.0
397,030 - ABZR87_RS01875 0.70 -0.9
397,030 - ABZR87_RS01875 0.70 -0.0
397,030 - ABZR87_RS01875 0.70 +0.4
397,030 - ABZR87_RS01875 0.70 +0.4
397,330 + ABZR87_RS01880 0.20 -0.2
397,330 + ABZR87_RS01880 0.20 -1.1
397,330 + ABZR87_RS01880 0.20 +0.0
397,330 + ABZR87_RS01880 0.20 -0.9
397,330 + ABZR87_RS01880 0.20 -0.4
397,330 + ABZR87_RS01880 0.20 -1.5
397,330 + ABZR87_RS01880 0.20 +0.0
397,331 - ABZR87_RS01880 0.20 +0.1
397,331 - ABZR87_RS01880 0.20 -1.0
397,331 - ABZR87_RS01880 0.20 -2.0
397,331 - ABZR87_RS01880 0.20 -0.1
397,352 - ABZR87_RS01880 0.22 +0.2
397,444 + ABZR87_RS01880 0.33 -0.5
397,444 + ABZR87_RS01880 0.33 +0.1
397,444 + ABZR87_RS01880 0.33 -0.3
397,444 + ABZR87_RS01880 0.33 +0.9
397,444 + ABZR87_RS01880 0.33 +0.3
397,445 - ABZR87_RS01880 0.33 -1.3
397,445 - ABZR87_RS01880 0.33 -1.1
397,445 - ABZR87_RS01880 0.33 -0.7
397,465 + ABZR87_RS01880 0.35 -1.2
397,465 + ABZR87_RS01880 0.35 -0.1
397,465 + ABZR87_RS01880 0.35 +0.6
397,466 - ABZR87_RS01880 0.35 +0.3
397,466 - ABZR87_RS01880 0.35 -0.7
397,466 - ABZR87_RS01880 0.35 -0.7
397,466 - ABZR87_RS01880 0.35 -0.3
397,466 - ABZR87_RS01880 0.35 +0.5
397,466 - ABZR87_RS01880 0.35 +0.5
397,501 + ABZR87_RS01880 0.39 -0.4
397,501 + ABZR87_RS01880 0.39 -0.2
397,501 + ABZR87_RS01880 0.39 +0.6
397,501 + ABZR87_RS01880 0.39 -0.4
397,501 + ABZR87_RS01880 0.39 +0.6
397,501 + ABZR87_RS01880 0.39 +0.1
397,501 + ABZR87_RS01880 0.39 -0.6
397,502 - ABZR87_RS01880 0.39 -0.9
397,502 - ABZR87_RS01880 0.39 -0.4
397,502 - ABZR87_RS01880 0.39 -2.4
397,502 - ABZR87_RS01880 0.39 -1.7
397,565 - ABZR87_RS01880 0.46 -0.1
397,565 - ABZR87_RS01880 0.46 +1.0

Or see this region's nucleotide sequence