Experiment: soil sample 8; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00435 and ABZR87_RS00440 overlap by 4 nucleotides ABZR87_RS00440 and ABZR87_RS00445 are separated by 576 nucleotides ABZR87_RS00445 and ABZR87_RS00450 are separated by 185 nucleotides
ABZR87_RS00435: ABZR87_RS00435 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 89,712 to 92,000
_RS00435
ABZR87_RS00440: ABZR87_RS00440 - ATP-dependent Clp protease adapter ClpS, at 91,997 to 92,323
_RS00440
ABZR87_RS00445: ABZR87_RS00445 - cold-shock protein, at 92,900 to 93,103
_RS00445
ABZR87_RS00450: ABZR87_RS00450 - DUF2501 domain-containing protein, at 93,289 to 93,744
_RS00450
Position (kb) 91
92
93 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 91.018 kb on + strand, within ABZR87_RS00435 at 91.018 kb on + strand, within ABZR87_RS00435 at 91.018 kb on + strand, within ABZR87_RS00435 at 91.018 kb on + strand, within ABZR87_RS00435 at 91.019 kb on - strand, within ABZR87_RS00435 at 91.222 kb on + strand, within ABZR87_RS00435 at 91.223 kb on - strand, within ABZR87_RS00435 at 91.223 kb on - strand, within ABZR87_RS00435 at 91.262 kb on - strand, within ABZR87_RS00435 at 91.262 kb on - strand, within ABZR87_RS00435 at 91.262 kb on - strand, within ABZR87_RS00435 at 91.630 kb on + strand, within ABZR87_RS00435 at 91.630 kb on + strand, within ABZR87_RS00435 at 91.630 kb on + strand, within ABZR87_RS00435 at 91.631 kb on - strand, within ABZR87_RS00435 at 91.631 kb on - strand, within ABZR87_RS00435 at 91.631 kb on - strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.634 kb on - strand, within ABZR87_RS00435 at 91.634 kb on - strand, within ABZR87_RS00435 at 91.634 kb on - strand, within ABZR87_RS00435 at 91.634 kb on - strand, within ABZR87_RS00435 at 91.925 kb on + strand at 91.926 kb on - strand at 91.926 kb on - strand at 92.054 kb on + strand, within ABZR87_RS00440 at 92.054 kb on + strand, within ABZR87_RS00440 at 92.054 kb on + strand, within ABZR87_RS00440 at 92.055 kb on - strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.095 kb on + strand, within ABZR87_RS00440 at 92.095 kb on + strand, within ABZR87_RS00440 at 92.095 kb on + strand, within ABZR87_RS00440 at 92.095 kb on + strand, within ABZR87_RS00440 at 92.096 kb on - strand, within ABZR87_RS00440 at 92.096 kb on - strand, within ABZR87_RS00440 at 92.110 kb on + strand, within ABZR87_RS00440 at 92.111 kb on - strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.170 kb on - strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.209 kb on - strand, within ABZR87_RS00440 at 92.209 kb on - strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.236 kb on - strand, within ABZR87_RS00440 at 92.236 kb on - strand, within ABZR87_RS00440 at 92.236 kb on - strand, within ABZR87_RS00440 at 92.329 kb on + strand at 92.329 kb on + strand at 92.330 kb on - strand at 92.330 kb on - strand at 92.334 kb on + strand at 92.335 kb on - strand at 92.335 kb on - strand at 92.369 kb on - strand at 92.369 kb on - strand at 92.369 kb on - strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.388 kb on - strand at 92.388 kb on - strand at 92.388 kb on - strand at 92.388 kb on - strand at 92.388 kb on - strand at 92.445 kb on - strand at 92.445 kb on - strand at 92.445 kb on - strand at 92.507 kb on + strand at 92.507 kb on + strand at 92.540 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.640 kb on - strand at 92.858 kb on + strand at 92.859 kb on - strand at 92.859 kb on - strand at 92.859 kb on - strand at 92.884 kb on + strand at 92.885 kb on - strand at 92.927 kb on - strand, within ABZR87_RS00445 at 93.082 kb on + strand, within ABZR87_RS00445 at 93.082 kb on + strand, within ABZR87_RS00445 at 93.083 kb on - strand at 93.247 kb on + strand at 93.247 kb on + strand at 93.247 kb on + strand at 93.248 kb on - strand at 93.248 kb on - strand at 93.257 kb on + strand at 93.257 kb on + strand at 93.258 kb on - strand at 93.258 kb on - strand at 93.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB remove 91,018 + ABZR87_RS00435 0.57 -1.7 91,018 + ABZR87_RS00435 0.57 -0.7 91,018 + ABZR87_RS00435 0.57 +0.1 91,018 + ABZR87_RS00435 0.57 -2.5 91,019 - ABZR87_RS00435 0.57 -2.0 91,222 + ABZR87_RS00435 0.66 -1.6 91,223 - ABZR87_RS00435 0.66 -2.0 91,223 - ABZR87_RS00435 0.66 -2.7 91,262 - ABZR87_RS00435 0.68 -2.9 91,262 - ABZR87_RS00435 0.68 -0.8 91,262 - ABZR87_RS00435 0.68 -3.1 91,630 + ABZR87_RS00435 0.84 -2.6 91,630 + ABZR87_RS00435 0.84 -2.3 91,630 + ABZR87_RS00435 0.84 -2.9 91,631 - ABZR87_RS00435 0.84 -1.4 91,631 - ABZR87_RS00435 0.84 -1.7 91,631 - ABZR87_RS00435 0.84 -1.6 91,633 + ABZR87_RS00435 0.84 -1.1 91,633 + ABZR87_RS00435 0.84 -0.8 91,633 + ABZR87_RS00435 0.84 +0.7 91,633 + ABZR87_RS00435 0.84 -1.7 91,633 + ABZR87_RS00435 0.84 -1.7 91,634 - ABZR87_RS00435 0.84 -2.2 91,634 - ABZR87_RS00435 0.84 -2.8 91,634 - ABZR87_RS00435 0.84 -3.0 91,634 - ABZR87_RS00435 0.84 -0.7 91,925 + -1.8 91,926 - -1.3 91,926 - +1.7 92,054 + ABZR87_RS00440 0.17 -0.7 92,054 + ABZR87_RS00440 0.17 -2.2 92,054 + ABZR87_RS00440 0.17 -2.3 92,055 - ABZR87_RS00440 0.18 +0.5 92,091 + ABZR87_RS00440 0.29 -0.1 92,091 + ABZR87_RS00440 0.29 -1.9 92,091 + ABZR87_RS00440 0.29 -2.9 92,091 + ABZR87_RS00440 0.29 -2.4 92,091 + ABZR87_RS00440 0.29 -3.0 92,091 + ABZR87_RS00440 0.29 -2.1 92,091 + ABZR87_RS00440 0.29 +1.1 92,091 + ABZR87_RS00440 0.29 -0.7 92,091 + ABZR87_RS00440 0.29 -3.9 92,091 + ABZR87_RS00440 0.29 -1.4 92,091 + ABZR87_RS00440 0.29 -3.4 92,091 + ABZR87_RS00440 0.29 -0.7 92,092 - ABZR87_RS00440 0.29 -1.7 92,092 - ABZR87_RS00440 0.29 -1.0 92,092 - ABZR87_RS00440 0.29 -1.8 92,092 - ABZR87_RS00440 0.29 -2.2 92,092 - ABZR87_RS00440 0.29 -0.3 92,092 - ABZR87_RS00440 0.29 -2.0 92,092 - ABZR87_RS00440 0.29 -1.7 92,092 - ABZR87_RS00440 0.29 -0.6 92,092 - ABZR87_RS00440 0.29 -0.8 92,092 - ABZR87_RS00440 0.29 -0.4 92,092 - ABZR87_RS00440 0.29 -1.3 92,092 - ABZR87_RS00440 0.29 -0.5 92,095 + ABZR87_RS00440 0.30 -2.4 92,095 + ABZR87_RS00440 0.30 -1.0 92,095 + ABZR87_RS00440 0.30 -0.8 92,095 + ABZR87_RS00440 0.30 -0.9 92,096 - ABZR87_RS00440 0.30 -0.6 92,096 - ABZR87_RS00440 0.30 +0.1 92,110 + ABZR87_RS00440 0.35 -1.2 92,111 - ABZR87_RS00440 0.35 -1.9 92,169 + ABZR87_RS00440 0.53 -4.8 92,169 + ABZR87_RS00440 0.53 -2.1 92,169 + ABZR87_RS00440 0.53 -0.8 92,169 + ABZR87_RS00440 0.53 -2.4 92,169 + ABZR87_RS00440 0.53 -4.3 92,170 - ABZR87_RS00440 0.53 +1.7 92,208 + ABZR87_RS00440 0.65 -0.2 92,208 + ABZR87_RS00440 0.65 -2.1 92,208 + ABZR87_RS00440 0.65 -2.4 92,208 + ABZR87_RS00440 0.65 -2.6 92,208 + ABZR87_RS00440 0.65 -1.1 92,208 + ABZR87_RS00440 0.65 -2.5 92,208 + ABZR87_RS00440 0.65 -2.1 92,208 + ABZR87_RS00440 0.65 -2.9 92,209 - ABZR87_RS00440 0.65 -2.2 92,209 - ABZR87_RS00440 0.65 -0.3 92,235 + ABZR87_RS00440 0.73 -3.2 92,235 + ABZR87_RS00440 0.73 -0.4 92,235 + ABZR87_RS00440 0.73 -1.9 92,235 + ABZR87_RS00440 0.73 -1.7 92,235 + ABZR87_RS00440 0.73 -1.3 92,236 - ABZR87_RS00440 0.73 -0.5 92,236 - ABZR87_RS00440 0.73 -2.6 92,236 - ABZR87_RS00440 0.73 -2.9 92,329 + -1.2 92,329 + -2.4 92,330 - +0.1 92,330 - -0.7 92,334 + -2.9 92,335 - -0.4 92,335 - -0.7 92,369 - +0.4 92,369 - -0.1 92,369 - -0.2 92,387 + -3.1 92,387 + -3.2 92,387 + -1.4 92,387 + -0.6 92,387 + -1.6 92,387 + -0.8 92,388 - -0.4 92,388 - +0.2 92,388 - -1.4 92,388 - +0.1 92,388 - +0.7 92,445 - -0.5 92,445 - -0.2 92,445 - -0.4 92,507 + -1.1 92,507 + -0.7 92,540 + -0.3 92,580 + -2.5 92,580 + -0.8 92,580 + -0.7 92,580 + -0.3 92,580 + -1.9 92,580 + -1.3 92,580 + +0.4 92,580 + -0.9 92,581 - +0.6 92,581 - -0.0 92,581 - +0.1 92,581 - +0.6 92,581 - +0.3 92,581 - +0.6 92,581 - +0.2 92,581 - +0.7 92,581 - +0.5 92,581 - +1.5 92,581 - +0.7 92,581 - -2.0 92,581 - -0.4 92,581 - +0.5 92,581 - -0.1 92,581 - -0.4 92,581 - -0.8 92,581 - +0.0 92,640 - +0.0 92,858 + -0.3 92,859 - +0.4 92,859 - +0.3 92,859 - +0.1 92,884 + -0.7 92,885 - +0.1 92,927 - ABZR87_RS00445 0.13 +0.3 93,082 + ABZR87_RS00445 0.89 +0.5 93,082 + ABZR87_RS00445 0.89 -0.5 93,083 - +0.0 93,247 + +1.4 93,247 + -0.4 93,247 + +0.7 93,248 - -0.3 93,248 - -0.7 93,257 + +0.2 93,257 + -0.4 93,258 - +0.3 93,258 - +1.6 93,258 - -1.7
Or see this region's nucleotide sequence