Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00255

Experiment: soil sample 8; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00250 and ABZR87_RS00255 overlap by 4 nucleotidesABZR87_RS00255 and ABZR87_RS00260 are separated by 243 nucleotidesABZR87_RS00260 and ABZR87_RS00265 are separated by 4 nucleotides ABZR87_RS00250: ABZR87_RS00250 - MFS transporter, at 49,672 to 50,874 _RS00250 ABZR87_RS00255: ABZR87_RS00255 - TIGR03571 family LLM class oxidoreductase, at 50,871 to 51,815 _RS00255 ABZR87_RS00260: ABZR87_RS00260 - MarR family winged helix-turn-helix transcriptional regulator, at 52,059 to 52,496 _RS00260 ABZR87_RS00265: ABZR87_RS00265 - chloride channel protein, at 52,501 to 54,318 _RS00265 Position (kb) 50 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1at 50.171 kb on + strand, within ABZR87_RS00250at 50.171 kb on + strand, within ABZR87_RS00250at 50.171 kb on + strand, within ABZR87_RS00250at 50.172 kb on - strand, within ABZR87_RS00250at 50.172 kb on - strand, within ABZR87_RS00250at 50.172 kb on - strand, within ABZR87_RS00250at 50.172 kb on - strand, within ABZR87_RS00250at 50.172 kb on - strand, within ABZR87_RS00250at 50.177 kb on + strand, within ABZR87_RS00250at 50.177 kb on + strand, within ABZR87_RS00250at 50.178 kb on - strand, within ABZR87_RS00250at 50.178 kb on - strand, within ABZR87_RS00250at 50.178 kb on - strand, within ABZR87_RS00250at 50.693 kb on + strand, within ABZR87_RS00250at 50.728 kb on + strand, within ABZR87_RS00250at 50.728 kb on + strand, within ABZR87_RS00250at 50.728 kb on + strand, within ABZR87_RS00250at 50.881 kb on + strandat 50.881 kb on + strandat 50.881 kb on + strandat 50.881 kb on + strandat 50.882 kb on - strandat 51.115 kb on + strand, within ABZR87_RS00255at 51.115 kb on + strand, within ABZR87_RS00255at 51.115 kb on + strand, within ABZR87_RS00255at 51.116 kb on - strand, within ABZR87_RS00255at 51.116 kb on - strand, within ABZR87_RS00255at 51.327 kb on + strand, within ABZR87_RS00255at 51.327 kb on + strand, within ABZR87_RS00255at 51.604 kb on + strand, within ABZR87_RS00255at 51.604 kb on + strand, within ABZR87_RS00255at 51.604 kb on + strand, within ABZR87_RS00255at 51.605 kb on - strand, within ABZR87_RS00255at 51.866 kb on + strandat 51.866 kb on + strandat 51.866 kb on + strandat 51.867 kb on - strandat 52.014 kb on - strandat 52.022 kb on + strandat 52.029 kb on - strandat 52.049 kb on + strandat 52.049 kb on + strandat 52.188 kb on + strand, within ABZR87_RS00260at 52.189 kb on - strand, within ABZR87_RS00260at 52.189 kb on - strand, within ABZR87_RS00260at 52.189 kb on - strand, within ABZR87_RS00260at 52.341 kb on - strand, within ABZR87_RS00260at 52.494 kb on + strandat 52.494 kb on + strandat 52.494 kb on + strandat 52.495 kb on - strandat 52.495 kb on - strandat 52.495 kb on - strandat 52.698 kb on + strand, within ABZR87_RS00265at 52.699 kb on - strand, within ABZR87_RS00265at 52.699 kb on - strand, within ABZR87_RS00265

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 8; outgrowth in LB
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50,171 + ABZR87_RS00250 0.41 -0.2
50,171 + ABZR87_RS00250 0.41 +0.4
50,171 + ABZR87_RS00250 0.41 -0.2
50,172 - ABZR87_RS00250 0.42 +1.0
50,172 - ABZR87_RS00250 0.42 +1.1
50,172 - ABZR87_RS00250 0.42 -0.1
50,172 - ABZR87_RS00250 0.42 +0.6
50,172 - ABZR87_RS00250 0.42 -0.9
50,177 + ABZR87_RS00250 0.42 -0.7
50,177 + ABZR87_RS00250 0.42 +1.7
50,178 - ABZR87_RS00250 0.42 -0.7
50,178 - ABZR87_RS00250 0.42 +0.9
50,178 - ABZR87_RS00250 0.42 +0.4
50,693 + ABZR87_RS00250 0.85 -3.0
50,728 + ABZR87_RS00250 0.88 +0.0
50,728 + ABZR87_RS00250 0.88 -0.2
50,728 + ABZR87_RS00250 0.88 -0.6
50,881 + +1.6
50,881 + +0.0
50,881 + -0.7
50,881 + +1.2
50,882 - +0.0
51,115 + ABZR87_RS00255 0.26 -0.6
51,115 + ABZR87_RS00255 0.26 -0.6
51,115 + ABZR87_RS00255 0.26 -0.5
51,116 - ABZR87_RS00255 0.26 -1.3
51,116 - ABZR87_RS00255 0.26 -1.0
51,327 + ABZR87_RS00255 0.48 +0.4
51,327 + ABZR87_RS00255 0.48 +0.2
51,604 + ABZR87_RS00255 0.78 -0.0
51,604 + ABZR87_RS00255 0.78 +0.3
51,604 + ABZR87_RS00255 0.78 -1.8
51,605 - ABZR87_RS00255 0.78 -0.0
51,866 + -0.3
51,866 + -0.0
51,866 + +0.1
51,867 - +0.1
52,014 - -0.2
52,022 + -0.2
52,029 - -0.5
52,049 + +0.8
52,049 + -0.4
52,188 + ABZR87_RS00260 0.29 +0.4
52,189 - ABZR87_RS00260 0.30 +0.1
52,189 - ABZR87_RS00260 0.30 +0.1
52,189 - ABZR87_RS00260 0.30 +0.3
52,341 - ABZR87_RS00260 0.64 +0.9
52,494 + -0.0
52,494 + -0.3
52,494 + +0.2
52,495 - -0.6
52,495 - +0.4
52,495 - -0.7
52,698 + ABZR87_RS00265 0.11 +0.7
52,699 - ABZR87_RS00265 0.11 -1.0
52,699 - ABZR87_RS00265 0.11 -0.3

Or see this region's nucleotide sequence